genewise output
Score 310.64 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000009_1.0 22 TLKPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVA
+LK + ++DC++ GTIY+Y A+ LN +EY+ FK++ GKHVLFVNVA
SLKKKIFQMDCHRDQKGTIYDYEAIMLNKKEYVPFKRYVGKHVLFVNVA
KV390107.1:subs75357 tcaaaatcagtcagcagaatgtggaacaaagtgctactggacgctgagg
ctaaattatagagaaagctaaaactttaaaaatctagatgaattttatc
ataaaccggttcataaccctctgccgttggactccggtgcgccctccgt
SPP00000009_1.0 71 AYXGLAAQYP LNALQEELKNFGV
Y GL AQYP LNALQEELK FG+
TYCGLTAQYP E:E[gaa] LNALQEELKPFGL
KV390107.1:subs75504 attgcagctcGGTAAGAA Intron 1 CAGAAcagccggcactgc
caggtccaac <1-----[75535:77557]-1> tactaaatactgt
ccttgaaatt gtacgggggctta
SPP00000009_1.0 95 IVLAFPCNQFGKQEPGTNSEILLGL
+VL FPCNQFGKQEPG N EIL GL
VVLGFPCNQFGKQEPGDNKEILPGL K:K[aag]
KV390107.1:subs77599 ggcgtctactgacgcggaagaccgcAAGTAAGTG Intron 2
tttgtcgaatgaaacgaaaattcgt <2-----[77676:78093]
tggctcccgtagaaaatcagtttgc
SPP00000009_1.0 120 YVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLK
YV PG GFVP+FQLFEKGDVNGEKEQKVF+FLK
YVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLK
KV390107.1:subs78091 CAGGtgccgggtgcatcctgagggaggagcagtatta
-2> atgcgggttcatattaagatagaaaaattgtta
tctagaatattcgttgaatgttaaagaccccgg
SPP00000009_1.0 154 NSCPPTSDLLGSSSQLFWEPMKVHDI
+SCP S++LG+ + W P+KVHDI
HSCPHPSEILGTFKSISWNPVKVHDI
KV390107.1:subs78194 GTGAGTG Intron 3 TAGcttccctgatgatatattacgagcga
<0-----[78194:79731]-0>acgcaccattgctactcgactataat
cctttctgtgcacatacgctcactcc
SPP00000009_1.0 180 RWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQFNT
RWNFEKFLVGP+G+PVM W HQA VS VK+DI+ YLKQF T
RWNFEKFLVGPNGIPVMRWSHQATVSLVKADIVAYLKQFKT
KV390107.1:subs79810 ctatgatcggcagacgacttccgagatgaggaggttactaa
ggataatttgcagtcttggcaacctgttacattcataatac
tgctagcgggctactcgggccgcaccacgaccgccggacac
//
Making a E in phase 1 intron
Making a K in phase 2 intron
>KV390107.1:subseq(473451,100206).pep
SLKKKIFQMDCHRDQKGTIYDYEAIMLNKKEYVPFKRYVGKHVLFVNVATYCGLTAQYPE
LNALQEELKPFGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPNFQLFEKGDVN
GEKEQKVFSFLKHSCPHPSEILGTFKSISWNPVKVHDIRWNFEKFLVGPNGIPVMRWSHQ
ATVSLVKADIVAYLKQFKT
//
>KV390107.1:subseq(473451,100206).[75357:79932].sp
TCACTTAAAAAAAAAATCTTCCAGATGGATTGTCACAGAGATCAAAAAGGCACCATCTAT
GACTATGAGGCCATCATGCTTAATAAGAAGGAATACGTTCCCTTCAAGCGGTATGTGGGC
AAGCACGTCCTCTTTGTCAACGTGGCTACCTACTGTGGTCTGACAGCACAATATCCTGAA
CTGAATGCACTCCAGGAGGAGCTGAAGCCCTTTGGTCTAGTTGTGCTGGGCTTTCCCTGC
AACCAGTTTGGAAAGCAAGAACCAGGAGATAACAAAGAGATTCTTCCTGGGCTCAAGTAT
GTCCGTCCAGGGGGAGGATTTGTACCTAATTTCCAGCTTTTTGAGAAAGGAGATGTGAAT
GGTGAAAAAGAACAGAAAGTCTTCAGCTTCTTGAAGCACTCCTGTCCTCATCCCTCTGAG
ATTTTGGGCACATTCAAATCTATATCCTGGAACCCTGTCAAAGTCCATGACATCCGTTGG
AACTTTGAAAAGTTCCTGGTGGGGCCCAATGGAATCCCTGTCATGCGGTGGTCCCACCAG
GCCACAGTCAGCTTAGTCAAGGCAGACATCGTGGCCTACTTGAAGCAATTCAAAACC
//
KV390107.1:subseq(473451,100206) GeneWise match 75357 79932 310.64 + . KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise cds 75357 75534 0.00 + 0 KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise intron 75535 77557 0.00 + . KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise cds 77558 77675 0.00 + 2 KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise intron 77676 78093 0.00 + . KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise cds 78094 78193 0.00 + 1 KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise intron 78194 79731 0.00 + . KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise cds 79732 79932 0.00 + 0 KV390107.1:subseq(473451,100206)-genewise-prediction-1
//
genewise output
Score 418.77 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000009_1.0 1 MFQQFQASCLVLFFLVGFAQQTLKPQNRK
M++QFQASCLVLFFLV FAQQTLKP++RK
MIRQFQASCLVLFFLVSFAQQTLKPEDRK
KV390107.1:sub-60071 aacctcgttcgcttcgatgccacacggaaGTAAGCA Intron 1
ttgataccgtttttttgtcaactacaaga<0-----[59984:56507]
gcggcagcttcgtcgtcttggcagtatgg
SPP00000009_1.0 30 VDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGL
VDC+K VTGTIYEYGALTL+GEEYIQFKQFAGK +LFVNVA Y L
VDCDKNVTGTIYEYGALTLSGEEYIQFKQFAGKPILFVNVATYCSL
KV390107.1:sub-56509 CAGggtgaagagaatgtggcacagggtactactggacactgaggattat
-0>tagaaatcgctaaagctctggaaatataatcgacttttatccaggt
gtccacgaccctgtaccccccggccgcggtacgccgtctacccccg
SPP00000009_1.0 76 AAQYP LNALQEELKNFGVIVLAF
AQYP LNALQEELK++GVIVL F
TAQYP E:E[gaa] LNALQEELKSLGVIVLGF
KV390107.1:sub-56368 agctcGGTAAGAA Intron 2 CAGAAcagccggcaacggagcgt
ccaac <1-----[56352:52117]-1> tactaaatagtgttttgt
atgtt gtgcgggggcgactggct
SPP00000009_1.0 100 PCNQFGKQEPGTNSEILLGL YVC
PCNQFGKQEPG NSEILLGL YV
PCNQFGKQEPGANSEILLGL K:K[aag] YVR
KV390107.1:sub-52060 ctactgacgcggatgaccgcAAGTGAGTG Intron 3 CAGGtgc
cgaatgaaacgcacatttgt <2-----[51998:51499]-2> atg
cccgtaaaaaaacagatttc tgt
SPP00000009_1.0 124 PGSGFVPSFQLFEKGDVNGEKEQKVFTFLK
PGSGFVP+FQLFEKGDVNGEKEQKVFTFLK
PGSGFVPNFQLFEKGDVNGEKEQKVFTFLK
KV390107.1:sub-51488 cgagtgcatcctgagggaggagcagtatca
cgggttcatattaagatagaaaaattctta
atcctactcgctgagtgtaaaaggcttcgg
SPP00000009_1.0 154 NSCPPTSDLLGSSSQLFWEPMKVHDI
N+CPPTSDLLGSS+QLFWEPMKVHDI
NACPPTSDLLGSSNQLFWEPMKVHDI
KV390107.1:sub-51398 GTGAGTG Intron 4 CAGagtccatgctgttaccttgcaagcga
<0-----[51398:50192]-0>acgccccattgccaattgactataat
ccctgctttgcaacgccggcggctcc
SPP00000009_1.0 180 RWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLK
RWNFEKFLVGP GVPVM WFH PVSTVKSDIL YLK
RWNFEKFLVGPHGVPVMRWFHSIPVSTVKSDILVYLK
KV390107.1:sub-50113 ctatgatcggccggcgacttcaacgaagatgacgtca
ggataatttgcagtcttggtagtctgctacatttata
cgctaatgggctactcgcgccttaccacgaccggcag
//
Making a E in phase 1 intron
Making a K in phase 2 intron
>KV390107.1:subseq(473451,100206).pep
MIRQFQASCLVLFFLVSFAQQTLKPEDRKVDCDKNVTGTIYEYGALTLSGEEYIQFKQFA
GKPILFVNVATYCSLTAQYPELNALQEELKSLGVIVLGFPCNQFGKQEPGANSEILLGLK
YVRPGSGFVPNFQLFEKGDVNGEKEQKVFTFLKNACPPTSDLLGSSNQLFWEPMKVHDIR
WNFEKFLVGPHGVPVMRWFHSIPVSTVKSDILVYLK
//
>KV390107.1:subseq(473451,100206).[60071:50001].sp
ATGATCCGGCAGTTCCAAGCGTCCTGTCTTGTCCTGTTTTTCCTGGTTAGCTTTGCTCAG
CAGACCCTAAAGCCTGAAGATAGGAAGGTGGATTGCGACAAAAACGTGACAGGCACCATC
TATGAGTATGGAGCCCTCACCCTCAGCGGCGAGGAGTACATCCAGTTCAAGCAGTTTGCA
GGCAAGCCCATCCTGTTTGTCAATGTAGCCACCTACTGCAGCTTGACAGCTCAGTATCCT
GAACTGAATGCGCTCCAGGAGGAGCTGAAGAGCCTGGGAGTCATTGTGCTGGGCTTTCCC
TGCAACCAGTTTGGAAAACAAGAACCAGGAGCAAACTCAGAGATACTTCTTGGTCTCAAG
TATGTGCGTCCAGGTAGCGGCTTTGTACCCAATTTCCAGCTCTTTGAGAAAGGGGATGTG
AATGGAGAAAAAGAACAGAAGGTCTTTACTTTCCTGAAGAACGCCTGCCCTCCGACCTCT
GATCTTTTGGGCTCATCAAACCAGCTCTTCTGGGAGCCCATGAAGGTCCATGACATCCGC
TGGAACTTTGAAAAATTTCTGGTGGGGCCCCATGGAGTCCCTGTCATGCGCTGGTTCCAC
AGTATTCCAGTCAGCACAGTCAAGTCAGACATCCTGGTGTACCTAAAG
//
KV390107.1:subseq(473451,100206) GeneWise match 60071 50003 418.77 - . KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise cds 60071 59985 0.00 - 0 KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise intron 59984 56507 0.00 - . KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise cds 56506 56353 0.00 - 0 KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise intron 56352 52117 0.00 - . KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise cds 52116 51999 0.00 - 2 KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise intron 51998 51499 0.00 - . KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise cds 51498 51399 0.00 - 1 KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise intron 51398 50192 0.00 - . KV390107.1:subseq(473451,100206)-genewise-prediction-1
KV390107.1:subseq(473451,100206) GeneWise cds 50191 50003 0.00 - 0 KV390107.1:subseq(473451,100206)-genewise-prediction-1
//