genewise output
Score 438.37 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000314_2.0 1 FQMDCHRDQKDTIYDYEAIMLNEKEYVPFKRYVGKHVLFVNVATYCGLT
FQMDCHRDQK TIYDYEAIMLN+KEYVPFKRYVGKHVLFVNVATYCGLT
FQMDCHRDQKGTIYDYEAIMLNKKEYVPFKRYVGKHVLFVNVATYCGLT
KV390107.1:subs45658 tcagtcagcagaatgtggaacaaagtgctactggacgctgaggattgca
tatagagaaagctaaaactttaaaaatctagatgaattttatccaggtc
cggttcataaccctctgccgttggactccggtgcgccctccgtccttga
SPP00000314_2.0 50 AQYP LNALQEELKPFGLVVLGFP
AQYP LNALQEELKPFGLVVLGFP
AQYP E:E[gaa] LNALQEELKPFGLVVLGFP
KV390107.1:subs45805 gctcGGTAAGAA Intron 1 CAGAAcagccggcactgcggcgtc
caac <1-----[45818:47840]-1> tactaaatactgttttgtc
aatt gtacgggggcttatggctc
SPP00000314_2.0 74 CNQFGKQEPGDNKEILPGL YVRP
CNQFGKQEPGDNKEILPGL YVRP
CNQFGKQEPGDNKEILPGL K:K[aag] YVRP
KV390107.1:subs47900 tactgacgcggaagaccgcAAGTAAGTG Intron 2 CAGGtgcc
gaatgaaacgaaaattcgt <2-----[47959:48376]-2> atgc
ccgtagaaaatcagtttgc tcta
SPP00000314_2.0 98 GGGFVPNFQLFEKGDVNGEKEQKVFSFLK
GGGFVPNFQLFEKGDVNGEKEQKVFSFLK
GGGFVPNFQLFEKGDVNGEKEQKVFSFLK
KV390107.1:subs48390 gggtgcatcctgagggaggagcagtattaGTGAGTG Intron 3
gggttcatattaagatagaaaaattgtta<0-----[48477:50014]
gaatattcgttgaatgttaaagaccccgg
SPP00000314_2.0 127 HACPHPSEILGTFKSISWDPVKVHDVRWNFEKFLVGPDGIPVMRWS
H+CPHPSEILGTFKSISW+PVKVHD+RWNFEKFLVGP+GIPVMRWS
HSCPHPSEILGTFKSISWNPVKVHDIRWNFEKFLVGPNGIPVMRWS
KV390107.1:subs50012 TAGcttccctgatgatatattacgagcgactatgatcggcagacgactt
-0>acgcaccattgctactcgactataatggataatttgcagtcttggc
cctttctgtgcacatacgctcactcctgctagcgggctactcgggc
SPP00000314_2.0 173 HQATVSIVKADIVANLKQFKTQ
HQATVS+VKADIVA LKQFKT+
HQATVSLVKADIVAYLKQFKTK
KV390107.1:subs50153 ccgagatgaggaggttactaaa
aacctgttacattcataataca
cgcaccacgaccgccggacaca
//
Making a E in phase 1 intron
Making a K in phase 2 intron
>KV390107.1:subseq(503168,100218).pep
FQMDCHRDQKGTIYDYEAIMLNKKEYVPFKRYVGKHVLFVNVATYCGLTAQYPELNALQE
ELKPFGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPNFQLFEKGDVNGEKEQK
VFSFLKHSCPHPSEILGTFKSISWNPVKVHDIRWNFEKFLVGPNGIPVMRWSHQATVSLV
KADIVAYLKQFKTK
//
>KV390107.1:subseq(503168,100218).[45658:50218].sp
TTCCAGATGGATTGTCACAGAGATCAAAAAGGCACCATCTATGACTATGAGGCCATCATG
CTTAATAAGAAGGAATACGTTCCCTTCAAGCGGTATGTGGGCAAGCACGTCCTCTTTGTC
AACGTGGCTACCTACTGTGGTCTGACAGCACAATATCCTGAACTGAATGCACTCCAGGAG
GAGCTGAAGCCCTTTGGTCTAGTTGTGCTGGGCTTTCCCTGCAACCAGTTTGGAAAGCAA
GAACCAGGAGATAACAAAGAGATTCTTCCTGGGCTCAAGTATGTCCGTCCAGGGGGAGGA
TTTGTACCTAATTTCCAGCTTTTTGAGAAAGGAGATGTGAATGGTGAAAAAGAACAGAAA
GTCTTCAGCTTCTTGAAGCACTCCTGTCCTCATCCCTCTGAGATTTTGGGCACATTCAAA
TCTATATCCTGGAACCCTGTCAAAGTCCATGACATCCGTTGGAACTTTGAAAAGTTCCTG
GTGGGGCCCAATGGAATCCCTGTCATGCGGTGGTCCCACCAGGCCACAGTCAGCTTAGTC
AAGGCAGACATCGTGGCCTACTTGAAGCAATTCAAAACCAAA
//
KV390107.1:subseq(503168,100218) GeneWise match 45658 50218 438.37 + . KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise cds 45658 45817 0.00 + 0 KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise intron 45818 47840 0.00 + . KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise cds 47841 47958 0.00 + 2 KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise intron 47959 48376 0.00 + . KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise cds 48377 48476 0.00 + 1 KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise intron 48477 50014 0.00 + . KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise cds 50015 50218 0.00 + 0 KV390107.1:subseq(503168,100218)-genewise-prediction-1
//
genewise output
Score 307.26 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000314_2.0 1 FQMDCHRDQKDTIYDYEAIMLNEKEYVPFKRYVGKHVLFVNVATYCGLT
FQ+DC ++ TIY+Y A+ L+ +EY+ FK++ GK +LFVNVATYC LT
FQVDCDKNVTGTIYEYGALTLSGEEYIQFKQFAGKPILFVNVATYCSLT
KV390107.1:sub-26795 tcggtgaagagaatgtggcacagggtactactggacactgaggattata
tatagaaatcgctaaagctctggaaatataatcgacttttatccaggtc
cggtccacgaccctgtaccccccggccgcggtacgccgtctacccccga
SPP00000314_2.0 50 AQYP LNALQEELKPFGLVVLGFP
AQYP LNALQEELK +G++VLGFP
AQYP E:E[gaa] LNALQEELKSLGVIVLGFP
KV390107.1:sub-26648 gctcGGTAAGAA Intron 1 CAGAAcagccggcaacggagcgtc
caac <1-----[26635:22400]-1> tactaaatagtgttttgtc
tgtt gtgcgggggcgactggctc
SPP00000314_2.0 74 CNQFGKQEPGDNKEILPGL YVRP
CNQFGKQEPG N EIL GL YVRP
CNQFGKQEPGANSEILLGL K:K[aag] YVRP
KV390107.1:sub-22340 tactgacgcggatgaccgcAAGTGAGTG Intron 2 CAGGtgcc
gaatgaaacgcacatttgt <2-----[22281:21782]-2> atgc
ccgtaaaaaaacagatttc tgta
SPP00000314_2.0 98 GGGFVPNFQLFEKGDVNGEKEQKVFSFLK
G GFVPNFQLFEKGDVNGEKEQKVF+FLK
GSGFVPNFQLFEKGDVNGEKEQKVFTFLK
KV390107.1:sub-21768 gagtgcatcctgagggaggagcagtatcaGTGAGTG Intron 3
gggttcatattaagatagaaaaattctta<0-----[21681:20475]
tcctactcgctgagtgtaaaaggcttcgg
SPP00000314_2.0 127 HACPHPSEILGTFKSISWDPVKVHDVRWNFEKFLVGPDGIPVMRWS
+ACP S++LG+ + W+P+KVHD+RWNFEKFLVGP G+PVMRW
NACPPTSDLLGSSNQLFWEPMKVHDIRWNFEKFLVGPHGVPVMRWF
KV390107.1:sub-20477 CAGagtccatgctgttaccttgcaagcgactatgatcggccggcgactt
-0>acgccccattgccaattgactataatggataatttgcagtcttggt
ccctgctttgcaacgccggcggctcccgctaatgggctactcgcgc
SPP00000314_2.0 173 HQATVSIVKADIVANLK
H VS VK+DI+ LK
HSIPVSTVKSDILVYLK
KV390107.1:sub-20336 caacgaagatgacgtca
agtctgctacatttata
cttaccacgaccggcag
//
Making a E in phase 1 intron
Making a K in phase 2 intron
>KV390107.1:subseq(503168,100218).pep
FQVDCDKNVTGTIYEYGALTLSGEEYIQFKQFAGKPILFVNVATYCSLTAQYPELNALQE
ELKSLGVIVLGFPCNQFGKQEPGANSEILLGLKYVRPGSGFVPNFQLFEKGDVNGEKEQK
VFTFLKNACPPTSDLLGSSNQLFWEPMKVHDIRWNFEKFLVGPHGVPVMRWFHSIPVSTV
KSDILVYLK
//
>KV390107.1:subseq(503168,100218).[26795:20284].sp
TTCCAGGTGGATTGCGACAAAAACGTGACAGGCACCATCTATGAGTATGGAGCCCTCACC
CTCAGCGGCGAGGAGTACATCCAGTTCAAGCAGTTTGCAGGCAAGCCCATCCTGTTTGTC
AATGTAGCCACCTACTGCAGCTTGACAGCTCAGTATCCTGAACTGAATGCGCTCCAGGAG
GAGCTGAAGAGCCTGGGAGTCATTGTGCTGGGCTTTCCCTGCAACCAGTTTGGAAAACAA
GAACCAGGAGCAAACTCAGAGATACTTCTTGGTCTCAAGTATGTGCGTCCAGGTAGCGGC
TTTGTACCCAATTTCCAGCTCTTTGAGAAAGGGGATGTGAATGGAGAAAAAGAACAGAAG
GTCTTTACTTTCCTGAAGAACGCCTGCCCTCCGACCTCTGATCTTTTGGGCTCATCAAAC
CAGCTCTTCTGGGAGCCCATGAAGGTCCATGACATCCGCTGGAACTTTGAAAAATTTCTG
GTGGGGCCCCATGGAGTCCCTGTCATGCGCTGGTTCCACAGTATTCCAGTCAGCACAGTC
AAGTCAGACATCCTGGTGTACCTAAAG
//
KV390107.1:subseq(503168,100218) GeneWise match 26795 20286 307.26 - . KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise cds 26795 26636 0.00 - 0 KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise intron 26635 22400 0.00 - . KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise cds 22399 22282 0.00 - 2 KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise intron 22281 21782 0.00 - . KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise cds 21781 21682 0.00 - 1 KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise intron 21681 20475 0.00 - . KV390107.1:subseq(503168,100218)-genewise-prediction-1
KV390107.1:subseq(503168,100218) GeneWise cds 20474 20286 0.00 - 0 KV390107.1:subseq(503168,100218)-genewise-prediction-1
//