genewise output
Score 19.66 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000345_2.0 136 NCFVVPMATGMSLTL
NCF +P+A+G+ + L
NCFRLPVASGLHIHL
KV390105.1:subs85013 attcccggtgtcact
agtgtctccgtatat
ttctcttattatctg
//
>KV390105.1:subseq(89394,100281).pep
NCFRLPVASGLHIHL
//
>KV390105.1:subseq(89394,100281).[85013:85057].sp
AATTGTTTCCGTCTCCCTGTTGCATCTGGTTTACATATCCATTTG
//
KV390105.1:subseq(89394,100281) GeneWise match 85013 85057 19.66 + . KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise cds 85013 85057 0.00 + 0 KV390105.1:subseq(89394,100281)-genewise-prediction-1
//
genewise output
Score 1020.73 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000345_2.0 1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK
MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK
MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK
KV390105.1:sub-86588 aacgatggggccgtcgtgacgtggcctcgccaccccga
tagagtccgagttcccatgaggacggcaaattgtttaa
gccgccggcgaggggtcgggctgcccgtgccaggtggg
SPP00000345_2.0 39 GKCPENGWDESTLELFLHELAIMDSN
GKCPENGWDESTLELFLHELAIMDSN
GKCPENGWDESTLELFLHELAIMDSN
KV390105.1:sub-86474 GTACCGA Intron 1 AAGgatcgagtggaacgcttcgcgaagaa
<0-----[86474:85335]-0>gagcaaggaagctatttaatcttaga
cgtagtcgtatatactatatacgccc
SPP00000345_2.0 65 NFLGNCGVGEREGRVASALVARRHY
NFLGNCGVGEREGRVASALVARRHY
NFLGNCGVGEREGRVASALVARRHY R:R[agg]
KV390105.1:sub-85256 attgatggggaggaggtgtggccctAGGTATCTT Intron 2
attgaggtgagaggtcccttcggaa <2-----[85179:83522]
tcactttgaagagatacaatttttc
SPP00000345_2.0 90 LIHGIGRSGDISAVQPKAAGSSLLNKITNFLVLDMIKLA
IHGIGRSGDISAVQPKAAGSSLLNKITN LVLD+IKLA
FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLA
KV390105.1:sub-83524 TAGGtacgagctggatggccagggtactaaaaattgcgaaacg
-2> ttagtggcgatcctacaccgcgttaatcactttattatc
cttgtaagtttttgaaatactctgcatcttgcgctcggt
SPP00000345_2.0 130 VHTVANCFVVPMATGMSLTLCFL
VHTVANCFVVPMATGMSLTLCFL
G:G[ggt] VHTVANCFVVPMATGMSLTLCFL
KV390105.1:sub-83403 GGTATGTA Intron 3 TAGGTgcaggattggcagagaacacttt
<1-----[83402:83091]-1> tactcagtttctccgtgtctgtt
ctaaccctattgattgtacatca
SPP00000345_2.0 154 TLRHKRPKAKYIIWPRIDQKSCFKSMITA
TLRHKRPKAKYIIWPRIDQKSCFKSMITA
TLRHKRPKAKYIIWPRIDQKSCFKSMITA
KV390105.1:sub-83019 atccaacagataatccagcatttataaag
ctgaagcacaattgcgtaaacgtacttcc
aaacaaagagttagaaacggcctacgcta
SPP00000345_2.0 183 FEPVVIENVLEGDELRTDLQAVK
FEPVVIENVLEGDELRTDLQAVK
G:G[ggt] FEPVVIENVLEGDELRTDLQAVK
KV390105.1:sub-82932 GGTAAGAG Intron 4 TAGGTtgcggagagtggggccagccgga
<1-----[82931:82022]-1> tactttaattagaatgcatacta
tgtggaattgatcggtacgaaag
SPP00000345_2.0 207 AKVQELGPDNILCIHSTTSCFAPRVPD
AKVQELGPDNILCIHSTTSCFAPRVPD
AKVQELGPDNILCIHSTTSCFAPRVPD R:R[aga]
KV390105.1:sub-81950 gagcgcgcgaactactaatttgcagcgAGGTAAATG Intron 5
cataatgcaattgtaccccgtccgtca <2-----[81867:78969]
tacgatgttctgtttttactttgggtt
SPP00000345_2.0 234 LEELAVICANFDIPHIVNNAYGVQSSKCMHLIQQ
LEELAVICANF IPHIVNNAYGVQSSKCMHLIQQ
LEELAVICANFGIPHIVNNAYGVQSSKCMHLIQQ
KV390105.1:sub-78971 TAGAcggcggatgatgaccagaagtggcttataccacc
-2> taatcttgcatgtcattaacagtaccagtattaa
aaagtgtttttctatacttttaggtagtgcctgg
SPP00000345_2.0 269 GARVGRIDAFVQSLDKNFMVPVGGAI
GARVGRIDAFVQSLDKNFMVPVGGAI
GARVGRIDAFVQSLDKNFMVPVGGAI
KV390105.1:sub-78865 GTAAGAA Intron 6 TAGggcggaaggtgcatgaatagcgggga
<0-----[78865:72351]-0>gcgtggtacttagtaaatttctggct
gtattaattttgcgcattgtaatcta
SPP00000345_2.0 295 IAGFNDSFIQEISKMYP RASASP
IAGFNDSFIQEISKMYP RASASP
IAGFNDSFIQEISKMYP G:G[gga] RASASP
KV390105.1:sub-72272 aggtagttacgaaaatcGGTAAATA Intron 7 CAGGAagtgtc
tcgtaacttaatgatac <1-----[72220:72088]-1> gccccc
ttctttcctgaccggta atatat
SPP00000345_2.0 319 SLDVLITLLSLGSNGYKKLLKERK EM
SLDVLITLLSLGSNGYKKLLKERK EM
SLDVLITLLSLGSNGYKKLLKERK EM
KV390105.1:sub-72067 ttggcaatttcgtagtaactagaaGTAAGCT Intron 8 CAGga
ctatttcttctgcagaaattaaga<0-----[71995:53400]-0>at
tatctttaaataatctgaaaaaag ag
SPP00000345_2.0 345 FSYLSNQIKKLSEAYNERLLHTPHNPISL
FSYLSNQIKKLSEAYNERLLHTPHNPISL
FSYLSNQIKKLSEAYNERLLHTPHNPISL
KV390105.1:sub-53393 tttttacaaattggtagactcaccacatt
tcatcaataatcacaaagttaccaactct
tatgccaagggaacctaaggtatctcata
SPP00000345_2.0 374 VTLKTLDKHHDKAVTQLGSMLFT
VTLKTLDKHHDKAVTQLGSMLFT
A:A[gct] VTLKTLDKHHDKAVTQLGSMLFT
KV390105.1:sub-53306 GGTAATTC Intron 9 CAGCTgacaatgaccgaggaccgtacta
<1-----[53305:51835]-1> tctactaaaaaactcatgctttc
gataaatactcatctgtctgttc
SPP00000345_2.0 398 RQVSGA VVPLGSVQTVSGYTFRG
RQVSGA VVPLGSVQTVSGYTFRG
RQVSGA R:R[agg] VVPLGSVQTVSGYTFRG
KV390105.1:sub-51763 acgtggAGGTAAGTA Intron 10 CAGGggccgtgcagagtatag
gatcgc <2-----[51743:50268]-2> ttctgctactggactgg
agttac tgttgtgatgtcttcac
SPP00000345_2.0 422 FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKTVRKEQSKDSD
FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKTVRKEQSK+SD
FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKTVRKEQSKESD
KV390105.1:sub-50215 tatcaaatctgtcaggtgagaaacgggctaaacgattaagaagcaagag
ttcacaaacgcatacccctgtataatatttagtaggtactgaaagaaga
tgatattctttccttaaccaggggtgcgcagatcgtagaaaaaatagtt
SPP00000345_2.0 471 DNYDKTEDVDIEEMALKLDNVLL
DNYDKTEDVDIEEMALKLDNVLL
DNYDKTEDVDIEEMALKLDNVLL
KV390105.1:sub-50068 gatgaaggggaggagtacgagcc
aaaaacaatataatctataattt
cttcatatgttaagtaaattatt
//
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a A in phase 1 intron
Making a R in phase 2 intron
>KV390105.1:subseq(89394,100281).pep
MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI
MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS
LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI
TAGFEPVVIENVLEGDELRTDLQAVKAKVQELGPDNILCIHSTTSCFAPRVPDRLEELAV
ICANFGIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND
SFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYN
ERLLHTPHNPISLAVTLKTLDKHHDKAVTQLGSMLFTRQVSGARVVPLGSVQTVSGYTFR
GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKTVRKEQSKESDDNYDKTEDVD
IEEMALKLDNVLL
//
>KV390105.1:subseq(89394,100281).[86588:49998].sp
ATGAACCGCGAGAGCTTCGCGGCGGGCGAGCGACTGGTGTCGCCGGCTTACGTGAGGCAG
GGCTGTGAGGCCCGCCGCTCGCATGAGCACCTCATACGGCTGCTTCTGGAGAAGGGCAAG
TGTCCAGAGAATGGCTGGGATGAAAGTACACTTGAACTCTTTTTACATGAACTTGCAATC
ATGGACAGCAACAATTTCTTAGGCAATTGTGGTGTGGGAGAAAGGGAAGGGAGAGTTGCA
TCCGCATTAGTTGCTCGTCGTCATTACAGGTTCATTCATGGGATTGGACGATCGGGTGAT
ATTTCTGCTGTGCAACCAAAAGCTGCAGGCTCTAGCCTTTTGAACAAAATTACCAATTCT
TTGGTCCTGGACATTATCAAGCTGGCTGGTGTCCATACAGTAGCCAACTGCTTTGTAGTT
CCTATGGCAACTGGTATGAGTCTAACCCTATGTTTCTTAACATTACGACACAAAAGACCA
AAGGCAAAGTATATTATATGGCCACGAATAGACCAGAAGTCCTGCTTTAAATCCATGATC
ACTGCAGGTTTTGAGCCTGTGGTGATAGAAAATGTTTTGGAAGGTGACGAGCTGCGTACA
GACCTGCAAGCAGTAAAGGCTAAAGTCCAGGAACTTGGGCCTGATAACATTCTGTGTATT
CATTCTACTACATCCTGTTTTGCTCCGAGGGTGCCTGATAGACTAGAAGAACTGGCTGTG
ATTTGTGCTAATTTTGGCATTCCACATATAGTCAATAATGCTTATGGAGTGCAGTCTTCA
AAGTGTATGCACCTCATTCAGCAGGGGGCTCGAGTTGGTAGAATAGATGCTTTTGTTCAG
AGCTTGGACAAAAATTTTATGGTTCCAGTAGGTGGCGCTATAATTGCTGGCTTTAATGAT
TCCTTCATTCAGGAAATCAGCAAGATGTATCCAGGAAGAGCTTCAGCTTCACCTTCTTTA
GATGTCCTTATTACTTTATTATCACTTGGATCAAATGGCTATAAGAAACTATTAAAAGAA
AGAAAGGAAATGTTTTCATATTTGTCCAACCAAATAAAGAAGTTGTCAGAAGCCTACAAT
GAAAGACTGTTGCATACACCTCACAATCCCATATCTTTAGCTGTGACACTTAAAACATTA
GATAAACACCATGACAAAGCTGTCACTCAGCTTGGCTCTATGCTTTTTACCAGACAGGTT
TCTGGAGCCAGGGTTGTGCCTCTTGGGTCTGTGCAAACTGTGAGTGGCTATACTTTCAGA
GGCTTTATGTCACATACAAATAATTACCCTTGTGCTTACCTCAATGCTGCATCAGCCATC
GGAATGAAGATGCAGGATGTGGACCTGTTCATAAAGAGACTTGACAGGTGTTTAAAGACA
GTAAGAAAAGAACAAAGTAAAGAGAGTGATGACAATTATGACAAAACTGAAGATGTGGAT
ATTGAAGAAATGGCTTTAAAACTAGATAATGTACTTCTT
//
KV390105.1:subseq(89394,100281) GeneWise match 86588 50000 1020.73 - . KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise cds 86588 86475 0.00 - 0 KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise intron 86474 85335 0.00 - . KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise cds 85334 85180 0.00 - 0 KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise intron 85179 83522 0.00 - . KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise cds 83521 83403 0.00 - 1 KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise intron 83402 83091 0.00 - . KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise cds 83090 82932 0.00 - 2 KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise intron 82931 82022 0.00 - . KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise cds 82021 81868 0.00 - 2 KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise intron 81867 78969 0.00 - . KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise cds 78968 78866 0.00 - 1 KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise intron 78865 72351 0.00 - . KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise cds 72350 72221 0.00 - 0 KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise intron 72220 72088 0.00 - . KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise cds 72087 71996 0.00 - 2 KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise intron 71995 53400 0.00 - . KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise cds 53399 53306 0.00 - 0 KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise intron 53305 51835 0.00 - . KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise cds 51834 51744 0.00 - 2 KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise intron 51743 50268 0.00 - . KV390105.1:subseq(89394,100281)-genewise-prediction-1
KV390105.1:subseq(89394,100281) GeneWise cds 50267 50000 0.00 - 1 KV390105.1:subseq(89394,100281)-genewise-prediction-1
//