genewise output
Score 419.92 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000313_2.0    1 FQVDCHGGMSGTIYEYGALTISGEEYVPFKQFAGKYLLFVNVATYXGLT 
                     FQVDCHGGMSGTIYEYGALTISGEEYVPFKQFAGKYLLFVNVA+YXGLT 
                     FQVDCHGGMSGTIYEYGALTISGEEYVPFKQFAGKYLLFVNVASYXGLT 
KV389966.1:subs47479 tcggtcggaagaatgtggcaaagggtgctactggatcctgaggattgca 
                     tatagaggtggctaaagctctggaaatctaatcgaattttatcgaggtc 
                     cggcctccgcccttgcacccctgggccccggttcaccctccacccacgg 


SPP00000313_2.0   50 GQYI                          LNALQEELAPFGLVVLGFP 
                     GQYI                          LNALQEELAPFGLVVLGFP 
                     GQYI          E:E[gaa]        LNALQEELAPFGLVVLGFP 
KV389966.1:subs47626 gctaGGTAAGAG  Intron 1   CAGAAcagccggcgctgcggcgtc 
                     gaat <1-----[47639:49036]-1>  tactaaatcctgttttgtc 
                     cgct                          gtaagagtaattgctgctc 


SPP00000313_2.0   74 CNQFGKQEPGENSEILPSL                          YVRP 
                     CNQFGKQEPGENSEILPSL                          YVRP 
                     CNQFGKQEPGENSEILPSL           K:K[aag]       YVRP 
KV389966.1:subs49096 tactgacgcggatgaccacAAGTGAGTG  Intron 2   CAGGtgcc 
                     gaatgaaacgaacattcgt  <2-----[49155:49517]-2> atgc 
                     ccataagaaagcggccccc                          tcaa 


SPP00000313_2.0   98 GGGFVPNFQLFEKGDVNGEKEQKFYTFLK                     
                     GGGFVPNFQLFEKGDVNGEKEQKFYTFLK                     
                     GGGFVPNFQLFEKGDVNGEKEQKFYTFLK                     
KV389966.1:subs49531 gggtgcatcctgagggaggagcattatcaGTGAGTG  Intron 3    
                     gggttcatattaagatagaaaaatactta<0-----[49618:49993] 
                     tgctcctcggtgagtgtagaggacctcag                     


SPP00000313_2.0  127    NSCPPTSELVGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWH 
                        NSCPPTSELVGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWH 
                        NSCPPTSELVGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWH 
KV389966.1:subs49991 TAGattccatgcggatgccttgcaagcgactatgatcggcggacaactc 
                     -0>acgccccattgccagttgactataatggataatttgcagtcttgga 
                        ccttccggcgtatccccgatggctcccgctggcgggattactgcgc 


SPP00000313_2.0  173 HRTTVSNVKMDILLYMR                                 
                     HRTTVSNVKMDILLYMR                                 
                     HRTTVSNVKMDILLYMR                                 
KV389966.1:subs50132 ccaagaagaagacttaa                                 
                     agcctgatatatttatg                                 
                     cgcgccctggccgacgg                                 


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>KV389966.1:subseq(685768,100182).pep
FQVDCHGGMSGTIYEYGALTISGEEYVPFKQFAGKYLLFVNVASYXGLTGQYIELNALQE
ELAPFGLVVLGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQK
FYTFLKNSCPPTSELVG
TSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNV KMDILLYMR // >KV389966.1:subseq(685768,100182).[47479:50182].sp TTCCAGGTGGACTGCCATGGCGGCATGAGCGGCACCATTTATGAGTACGGAGCCCTCACC ATCAGTGGGGAGGAGTACGTCCCCTTCAAGCAGTTTGCTGGCAAATACCTCCTCTTTGTC AACGTAGCCAGCTACTGAGGCCTGACGGGCCAGTACATTGAACTGAATGCACTACAGGAA GAGCTTGCACCATTTGGTCTGGTCGTTCTGGGCTTTCCCTGCAACCAATTTGGAAAACAG GAACCAGGAGAGAACTCGGAGATCCTCCCCAGCCTCAAGTATGTCCGACCAGGTGGGGGC TTTGTCCCCAATTTCCAGCTGTTTGAGAAAGGGGATGTGAATGGAGAGAAAGAGCAGAAA TTCTACACTTTCCTAAAGAACTCCTGTCCTCCCACCTCGGAGCTCGTGGGTACATCTGAC CGCCTCTTCTGGGAACCTATGAAGGTCCATGACATCCGCTGGAACTTTGAGAAGTTCCTG GTGGGGCCAGATGGTATACCCATTATGCGCTGGCACCACCGGACCACGGTCAGCAACGTT AAGATGGACATCCTGTTATACATGAGG // KV389966.1:subseq(685768,100182) GeneWise match 47479 50182 419.92 + . KV389966.1:subseq(685768,100182)-genewise-prediction-1 KV389966.1:subseq(685768,100182) GeneWise cds 47479 47638 0.00 + 0 KV389966.1:subseq(685768,100182)-genewise-prediction-1 KV389966.1:subseq(685768,100182) GeneWise intron 47639 49036 0.00 + . KV389966.1:subseq(685768,100182)-genewise-prediction-1 KV389966.1:subseq(685768,100182) GeneWise cds 49037 49154 0.00 + 2 KV389966.1:subseq(685768,100182)-genewise-prediction-1 KV389966.1:subseq(685768,100182) GeneWise intron 49155 49517 0.00 + . KV389966.1:subseq(685768,100182)-genewise-prediction-1 KV389966.1:subseq(685768,100182) GeneWise cds 49518 49617 0.00 + 1 KV389966.1:subseq(685768,100182)-genewise-prediction-1 KV389966.1:subseq(685768,100182) GeneWise intron 49618 49993 0.00 + . KV389966.1:subseq(685768,100182)-genewise-prediction-1 KV389966.1:subseq(685768,100182) GeneWise cds 49994 50182 0.00 + 0 KV389966.1:subseq(685768,100182)-genewise-prediction-1 // genewise output Score 24.24 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000313_2.0 122 YTFLKNSCPPTSELVGTSDRLFW YTF K CP S L G+ + L W YTFRKRPCPCGSLLAGSPEHLPW KV389966.1:sub-63161 tatcaactctgactggacgccct actgagcgcgggttcggcaatcg catgagacgcgcggagtagccag // >KV389966.1:subseq(685768,100182).pep YTFRKRPCPCGSLLAGSPEHLPW // >KV389966.1:subseq(685768,100182).[63161:63091].sp TACACATTTCGGAAAAGGCCATGCCCGTGCGGGAGCCTGTTGGCAGGGAGTCCAGAGCAC CTCCCATGG // KV389966.1:subseq(685768,100182) GeneWise match 63161 63093 24.24 - . KV389966.1:subseq(685768,100182)-genewise-prediction-1 KV389966.1:subseq(685768,100182) GeneWise cds 63161 63093 0.00 - 0 KV389966.1:subseq(685768,100182)-genewise-prediction-1 //