genewise output
Score 839.65 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000377_2.0 14 SGQWDYDLLVIGGGSGGLACAKE
+GQWDYDLLVIGGGSGGLACAKE
AGQWDYDLLVIGGGSGGLACAKE A:A[gct]
KV389887.1:subs17012 ggctgtgccgagggtggcgtgagGGTATGAA Intron 1 CAGCT
cgagaaattttgggcggtcgcaa <1-----[17082:26267]-1>
atggcctcggtcgatccgttcga
SPP00000377_2.0 38 AQLGRKVAVVDYVEPSPR TRWGL
AQLGRKVAVVDYVEPSPR TRWGL
AQLGRKVAVVDYVEPSPR G:G[ggc] TRWGL
KV389887.1:subs26270 gccgaagggggtggctccGGTAGGCA Intron 2 CAGGCactgc
catggatcttaatacccg <1-----[26325:27104]-1> cgggt
cggagggcgactgattca cggcc
SPP00000377_2.0 62 GGTCVNVGCIPKKLMHQAALLGGLIRDAPHYGWEVAQPVPHD
GGTCVNVGCIPKKLMHQAALLGGLIRDAPHYGWEVAQPVPHD
GGTCVNVGCIPKKLMHQAALLGGLIRDAPHYGWEVAQPVPHD
KV389887.1:subs27122 ggatgaggtacaacaccggccggcacggcctgtgggccgccg
ggcgtatggtcaattaaccttggttgaccaaggatcactcaa
ccccccccctcggggcggggggcgcaccctccgggcgtggtc
SPP00000377_2.0 104 RKMAEAVQNHVKSLNWGHRVQLH
RKMAEAVQNHVKSLNWGHRVQLH
W:W[tgg] RKMAEAVQNHVKSLNWGHRVQLH
KV389887.1:subs27248 TGGTAAGGA Intron 3 CAGGaaaggggcacgattatgccgccc
<2-----[27250:28051]-2> gatcactaaatactaggagtata
gggaattatcgacgcgccccggc
SPP00000377_2.0 128 D RQ
D +
D -:R[agg] TR
KV389887.1:subs28122 gAGGTACTGA Intron 4 TAGGaaGTGAGTG Intron 5
a <2-----[28127:33645]-2> cg<0-----[33653:35520]
c ca
SPP00000377_2.0 131 IEGALEYGITSDDIFWLKESPGK
IEGALEYGITSDDIFWLKESPGK
IEGALEYGITSDDIFWLKESPGK T:T[acg]
KV389887.1:subs35518 CAGagggtgtgaaaggattcagtcgaACGTAAGGC Intron 6
-0>tagctaagtcgaattgtaaccga <2-----[35592:46241]
catcgatacactcccggggctaa
SPP00000377_2.0 154 LVVGAS VALECAGFLTGIG
LVVGAS VALECAGFLTGIG
LVVGAS Y:Y[tac] VALECAGFLTGIG
KV389887.1:subs46239 CAGGtggggaTGTATCCT Intron 7 CAGACggcgtggtcagag
-2> tttgcg <1-----[46262:47299]-1> tctagcgttcgtg
ggcgcc gcggttccccgcg
SPP00000377_2.0 175 LDVTVMMRSIPLRGFDQ QMSSLVTEH
LD TVMMRSIPLRGFDQ QMSSLVTEH
LDTTVMMRSIPLRGFDQ QMSSLVTEH
KV389887.1:subs47341 cgaagaacaacccgtgcGTAGTGC Intron 8 CAGcatttgagc
tacctttggtctggtaa<0-----[47392:50002]-0>atccttcaa
gccccggacccccctcg agccgcggc
SPP00000377_2.0 201 MASHGTRFLRGCTPSQVRRLLDGQLQVTWEDHTTGKEGTGTFNTVLWAV
MASHGTRFLRGCTPSQVRRL DGQLQVTWEDHTTGKEGTGTFNTVLWAV
MASHGTRFLRGCTPSQVRRLPDGQLQVTWEDHTTGKEGTGTFNTVLWAV
KV389887.1:subs50030 agtcgactcagtactcgaaccggcccgatggcaagaggagataagctgg
tccagcgttgggcccatggtcagatatcgaaaccgaagcgctacttgct
gattccgcggcccccacggcaccgggccggccctcggcgccccccggca
SPP00000377_2.0 250 RVPDTRSLNLEKAGVDTSPNTQK
RVPDTRSLNLEKAGVDTSP+TQK
G:G[ggt] RVPDTRSLNLEKAGVDTSPSTQK
KV389887.1:subs50177 GGTAAGGG Intron 9 CAGGTcgcgaaacatgaggggaacaaca
<1-----[50178:61391]-1> gtcacggtataacgtacgcgcaa
ataccatgtgggtgacttcctgg
SPP00000377_2.0 274 ILVDSREATSVPHIYAIGDVVE GRPE
ILVDSREATSVPHIYAIGDVVE GRPE
ILVDSREATSVPHIYAIGDVVE GRPE
KV389887.1:subs61463 acggtcggatgccatgagggggGTATGGA Intron 10 TAGgccg
tttacgaccctcatactgatta<0-----[61529:64570]-0>ggca
cggccgacttgccctctccagg ggtg
SPP00000377_2.0 300 LTPTAVMAGRLLAQRLFGGSSDLMDYDK
LTPTAVMAGRLLAQRLFGGSSDLMDYDK
LTPTAVMAGRLLAQRLFGGSSDLMDYDK
KV389887.1:subs64583 cacaggaggaccgccctggttgcagtgaGTGAGTT Intron 11
tccccttcggttcagttggccattaaaa<0-----[64667:65012]
ggcgtcgtggcgaggcccgcacggctca
SPP00000377_2.0 328 VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE
VPTTVFTPLEYGCVGLSEEEAVARHGQE VE
VPTTVFTPLEYGCVGLSEEEAVARHGQERVE
KV389887.1:subs65010 CAGgcaagtaccgtgtggctggggggccgcgcgg
-0>tcccttcctaaggtgtcaaactcgagaagta
tcgccccaggcctgggcgggagtctgggttg
SPP00000377_2.0 359 VYHAHYKPLEFTVPGRDASQCYVK
VYHAHYKPLEFTVPGRDASQCYVK
VYHAHYKPLEFTVPGRDASQCYVK
KV389887.1:subs65106 GTGAGGC Intron 12 CAGgtcgctaccgtagcgcggtcttga
<0-----[65106:66794]-0>taacaaactatctcggaccagata
ctcgttaaggcagtggtacgtcag
SPP00000377_2.0 383 MVCLREPPQPVLGLHFLGPNAGEVTQ
MVCLREPPQ VLGLHFLGPNAGEVTQ
MVCLREPPQLVLGLHFLGPNAGEVTQ
KV389887.1:subs66867 GTGAGCA Intron 13 CAGagtcagccccgcgcctcgcaggggac
<0-----[66867:67056]-0>ttgtgaccatttgtattgcacgatca
ggcgggcggagacgccccccacatta
SPP00000377_2.0 409 GFALGI CGASYVQVMQTVGIHPT
GFALGI CGASYVQVMQTVGIHPT
GFALGI K:K[aag] CGASYVQVMQTVGIHPT
KV389887.1:subs67135 gtgcgaAAGTAAGTC Intron 14 CAGGtggttgcgacaggacca
gtctgt <2-----[67155:67969]-2> ggccatattactgtacc
attggc tgcctgggggcgcctcg
SPP00000377_2.0 433 CSEEVVKLRISKRSGLDPTVTGC
CSEEVVKLRISKRSGLDPTVTGC
CSEEVVKLRISKRSGLDPTVTGC
KV389887.1:subs68022 ttggggaccatactgcgcagagt
gcaattatgtcagcgtacctcgg
ccggacggcccgcacgccagacc
//
Making a A in phase 1 intron
Making a G in phase 1 intron
Making a W in phase 2 intron
Making a R in phase 2 intron
Making a T in phase 2 intron
Making a Y in phase 1 intron
Making a G in phase 1 intron
Making a K in phase 2 intron
>KV389887.1:subseq(389251,100209).pep
AGQWDYDLLVIGGGSGGLACAKEAAQLGRKVAVVDYVEPSPRGTRWGLGGTCVNVGCIPK
KLMHQAALLGGLIRDAPHYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLHDRTRIE
GALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQ
MSSLVTEHMASHGTRFLRGCTPSQVRRLPDGQLQVTWEDHTTGKEGTGTFNTVLWAVGRV
PDTRSLNLEKAGVDTSPSTQKILVDSREATSVPHIYAIGDVVEGRPELTPTAVMAGRLLA
QRLFGGSSDLMDYDKVPTTVFTPLEYGCVGLSEEEAVARHGQERVEVYHAHYKPLEFTVP
GRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYVQVMQTVGIHPT
CSEEVVKLRISKRSGLDPTVTGC
//
>KV389887.1:subseq(389251,100209).[17012:68090].sp
GCAGGTCAGTGGGACTACGATCTCCTGGTGATTGGCGGGGGATCTGGCGGCCTGGCTTGT
GCCAAGGAAGCTGCCCAGCTGGGAAGGAAGGTGGCCGTGGTAGACTATGTGGAACCTTCT
CCCCGAGGCACCCGGTGGGGCCTCGGCGGCACCTGCGTCAACGTCGGCTGCATTCCCAAG
AAGCTGATGCACCAGGCGGCGCTGCTGGGGGGCCTGATCCGAGACGCCCCCCATTACGGC
TGGGAGGTGGCCCAGCCTGTGCCGCATGACTGGAGGAAGATGGCAGAAGCTGTTCAAAAT
CACGTGAAATCCTTGAACTGGGGCCACCGCGTCCAGCTGCACGACAGGACCAGAATCGAA
GGTGCCTTGGAATATGGAATCACAAGCGATGACATCTTCTGGCTGAAGGAGTCCCCTGGA
AAAACGTTGGTGGTCGGGGCCAGCTACGTGGCCCTGGAGTGTGCTGGCTTCCTCACCGGG
ATCGGGCTGGACACCACCGTCATGATGCGAAGCATCCCCCTCCGCGGCTTTGACCAGCAA
ATGTCCTCCTTGGTCACGGAGCACATGGCATCTCATGGCACCCGGTTCCTGAGGGGCTGC
ACCCCCTCCCAAGTCAGGAGGCTCCCAGACGGCCAGCTGCAGGTCACCTGGGAGGACCAC
ACCACTGGCAAGGAGGGCACGGGCACCTTCAACACCGTCCTGTGGGCCGTAGGTCGAGTT
CCAGACACCAGAAGTCTGAATTTGGAGAAGGCTGGGGTAGACACTAGTCCCAGCACTCAG
AAGATCCTGGTGGACTCCCGGGAAGCCACTTCTGTGCCCCACATCTATGCCATTGGCGAC
GTAGTGGAGGGGCGGCCTGAGCTGACGCCCACGGCTGTCATGGCTGGGAGGCTCCTGGCA
CAGCGGCTCTTCGGCGGGTCCTCAGACCTGATGGACTATGACAAAGTTCCCACGACCGTC
TTCACCCCACTGGAGTACGGCTGTGTGGGGCTGTCCGAGGAGGAGGCAGTGGCTCGCCAT
GGGCAGGAGCGTGTTGAGGTCTATCACGCGCATTATAAACCACTGGAGTTCACAGTGCCT
GGGCGGGATGCATCCCAGTGTTACGTAAAGATGGTGTGCCTGAGGGAGCCCCCGCAGCTA
GTGCTAGGCCTGCACTTCCTCGGCCCCAACGCAGGCGAAGTTACTCAAGGATTTGCTCTG
GGGATCAAGTGTGGGGCCTCCTATGTGCAGGTGATGCAGACCGTGGGCATCCATCCCACG
TGCTCCGAGGAGGTAGTCAAGCTGCGCATCTCCAAGCGCTCAGGCCTGGACCCCACAGTG
ACAGGCTGC
//
KV389887.1:subseq(389251,100209) GeneWise match 17012 68090 839.65 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 17012 17081 0.00 + 0 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 17082 26267 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 26268 26324 0.00 + 2 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 26325 27104 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 27105 27249 0.00 + 2 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 27250 28051 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 28052 28126 0.00 + 1 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 28127 33645 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 33646 33652 0.00 + 1 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 33653 35520 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 35521 35591 0.00 + 0 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 35592 46241 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 46242 46261 0.00 + 1 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 46262 47299 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 47300 47391 0.00 + 2 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 47392 50002 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 50003 50177 0.00 + 0 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 50178 61391 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 61392 61528 0.00 + 2 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 61529 64570 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 64571 64666 0.00 + 0 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 64667 65012 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 65013 65105 0.00 + 0 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 65106 66794 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 66795 66866 0.00 + 0 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 66867 67056 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 67057 67154 0.00 + 0 KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise intron 67155 67969 0.00 + . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 67970 68090 0.00 + 1 KV389887.1:subseq(389251,100209)-genewise-prediction-1
//
genewise output
Score 20.52 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000377_2.0 374 RDASQCYVKMVCLREPPQPVLGL
R S+ + +++CL +PP+ VLGL
RPVSKSWPQVICLPQPPK-VLGL
KV389887.1:sub-86596 acgtattccgatccccca gcgt
gctcacgcattgtcacca ttgt
gacaacgtagtcgtgtca agaa
//
>KV389887.1:subseq(389251,100209).pep
RPVSKSWPQVICLPQPPKVLGL
//
>KV389887.1:subseq(389251,100209).[86596:86529].sp
AGGCCAGTCTCAAAATCCTGGCCTCAAGTGATTTGCCTGCCTCAGCCTCCCAAAGTACTG
GGATTA
//
KV389887.1:subseq(389251,100209) GeneWise match 86596 86531 20.52 - . KV389887.1:subseq(389251,100209)-genewise-prediction-1
KV389887.1:subseq(389251,100209) GeneWise cds 86596 86531 0.00 - 0 KV389887.1:subseq(389251,100209)-genewise-prediction-1
//