genewise output
Score 1402.79 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000362_2.0 1 MAAHRVAVGASLAAARLLLLGRCRLSPVPRSALSGAAMEPAPRWLAGLR
MAA RVAV ASLAA R L LGR RLSPVPRSALSGAAMEPAPRWLAGLR
MAARRVAVCASLAATRPLPLGRRRLSPVPRSALSGAAMEPAPRWLAGLR
KV389755.1:subs49922 aggcagggtgtcggacccccgcccctcgcctgttgggagcgcctcggcc
tccggtctgcctcccgctctggggtcctcgcctcgcctacccggtcgtg
gcgcgcgcccgcttcacgccccccggcgcctgggcccggtggcgggagc
SPP00000362_2.0 50 FDNRALRALPVETPPAGPEGASTTPRLVPGACFTRVRPTPLRQPRLVAL
FDNRALRALPVETPPAGPEGA TTPRLVPGACFTRVRPTPLRQPRLVAL
FDNRALRALPVETPPAGPEGAWTTPRLVPGACFTRVRPTPLRQPRLVAL
KV389755.1:subs50069 tgacgccgccggaccggcgggtaacccgcggttacgccacccccccggc
taagctgctctaccccgcagcgcccgttcgcgtcgtgccctgacgttct
cccctgcgggggggtctcgccgcgggcgcgcccccggccggggcccggg
SPP00000362_2.0 99 SEPALALLGLGAPPAPEAEAEAALFFSGNALLPGAEPAAHCYCGHQFGH
SEPALALLGLGAPPAPEAEAEAALFFSGNALLPGAEPAAHCYCGHQFG
SEPALALLGLGAPPAPEAEAEAALFFSGNALLPGAEPAAHCYCGHQFGQ
KV389755.1:subs50216 tgcgcgccgcggccgcgggggggtttagagcccgggcggctttgcctgc
cacctcttgtgcccccacacacctttggacttcgcacccagaggaatga
ggctggggcggggcgcgcacgcggcccccgcggccgccgccccccgccg
SPP00000362_2.0 148 FAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFS
FAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFS
FAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFS
KV389755.1:subs50363 tggccgggggatcgggtaggggctgcccagggcactt
tcgatgagcctatgatgcccgaggatatagcgccctc
ccgggcccccgcacggcggccgcggggcgccgcgccc
SPP00000362_2.0 185 RPDGRKVLRSSIREFLCSEAMFH
DGRKVLRSSIREFLCSEAMFH
-:R[aga] QADGRKVLRSSIREFLCSEAMFH
KV389755.1:subs50474 AGGTGGGCC Intron 1 CAGAcgggcagcctaacgtctaggatc
<2-----[50476:54740]-2> acaggattgcgtgattggactta
gcctcgcagactggcgccacgcc
SPP00000362_2.0 208 LGVPTTRAGACVTSESTVARDVFYDGNPKYEKCTVVLRIASTFI
LGVPTTRAGACVTSESTVARDVFYDGNPKYEKCTVVLRIASTFI
LGVPTTRAGACVTSESTVARDVFYDGNPKYEKCTVVLRIASTFI
KV389755.1:subs54811 cggcaacgggtgatgtaggcggttggacatgataggtcagtata
tgtcccgcgcgtccacctcgattaagacaaaagctttgtccctt
ggcccagttcccgtgcgggttgcttttcataacatggtatctca
SPP00000362_2.0 252 FGSFEIFKSTDEHSGRAGPSVGR
FGSFEIFKS DEH+GRAGPSVGR
R:R[agg] FGSFEIFKSADEHTGRAGPSVGR
KV389755.1:subs54943 AGGTAATGC Intron 2 CAGGtgttgatatgggcagcggcagga
<2-----[54945:56617]-2> tgctattaccaaacggcgcgtgg
tactgttgcatgcggcacccggg
SPP00000362_2.0 276 NDIRVQLLDYVIGSFYPEIQAAHASDSVQRNAAFFRE
NDIRVQLLDYVI SFYPEIQAAHASD+VQRNAAFFRE
NDIRVQLLDYVISSFYPEIQAAHASDNVQRNAAFFRE
KV389755.1:subs56688 agacgcccgtgaatttcgacggcgagagcaaggttcg
aatgtattaattgctacataccacgaatagaccttga
cctcgggccccccccccgcgttcccccggatccccgg
SPP00000362_2.0 313 VTRRTARMVAEWQCVGFCHGVLNTDN
VTRRTARMVAEWQCVGFCHGVLNTDN
VTRRTARMVAEWQCVGFCHGVLNTDN
KV389755.1:subs56799 GTCAGTG Intron 3 CAGgaccagcagggtctggttcggcaaga
<0-----[56799:58215]-0>tcggccgttcagagtgtgagttacaa
gagcgggggcgggcacccccgtcccc
SPP00000362_2.0 339 MSILGLTIDYGPFGFLD YDPDHV
MSILGLTIDYGPFGFLD YDPDHV
MSILGLTIDYGPFGFLD R:R[agg] YDPDHV
KV389755.1:subs58294 aaacgcaagtgctgtcgAGGTGAGCA Intron 4 CAGGtgcgcg
tgttgtctaagctgtta <2-----[58347:58640]-2> aacaat
gccgggccccgccccgc cccccg
SPP00000362_2.0 363 CNASDNTGRYAYSKQPEVCKWNLQKLAEALQPELPLELGEAILAEEFDA
CNASDNTGRYAYSKQPEVCKWNL+KLAEALQPELPLELGEAILAEEFDA
CNASDNTGRYAYSKQPEVCKWNLRKLAEALQPELPLELGEAILAEEFDA
KV389755.1:subs58660 tagtgaagctgtaaccggtataccacgggcccgcccgcgggacgggtgg
gaccaacggacagaacatgagatgatcactacatctatgacttcaatac
ctcaccccccgccggcggcggcggggtgggggggcgggcgccgcggtcc
SPP00000362_2.0 412 EFQRHYLQKMRRKLGLVQVELEEDGALVSRLLQTMHLT
EFQRHYLQKMRRKLGLV+VELEEDG LVS+LLQTMHLT
EFQRHYLQKMRRKLGLVRVELEEDGVLVSKLLQTMHLT
KV389755.1:subs58807 gtcactccaacaacgcgcggcgggggcgtacccaacca
atagaataatggatgttgtataaagtttcattactatc
gcagccggggagagccggggggacggggcgcggcgcgt
SPP00000362_2.0 450 ADFTNTFYLLSSFLVDPESPGLA
ADFTNTFYLLSSFLVDPESPGLA
G:G[ggt] ADFTNTFYLLSSFLVDPESPGLA
KV389755.1:subs58921 GGTGAGTG Intron 5 CAGGTggtaaatttcattcggcgtcgcg
<1-----[58922:62498]-1> catcactattgctttacaccgtc
tccaccccggcccggtggagcgg
SPP00000362_2.0 474 EFLARLMEQCASLEELRLAFRPQMDP
EFLARLMEQCASLEELR AFRPQMDP
EFLARLMEQCASLEELRQAFRPQMDP R:R[cgg]
KV389755.1:subs62570 gtcgacagctgtcggcacgtcccagcCGGTGGGTA Intron 6
attcgttaagcctaatgactgcatac <2-----[62650:63539]
gcgcgggggttcgggggaccgcggtc
SPP00000362_2.0 500 QLSMMLVLAQSNPQLFALMGTRAGIARELERVEQQSQLEQLSVAE
QLSMML+LAQSNPQLFALMGTRAGIARELERVEQQSQLEQLS AE
QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSQLEQLSAAE
KV389755.1:subs63537 CAGGcctaatacgctaccctgcagacggagagcgcggcctccgccaggg
-2> atctttttcacacattcttgcgcgtcgatagtaaacataatgcca
ggcgggggagacgggcgcgccgacccggggcggggtggaggcgcg
SPP00000362_2.0 546 LQSRNHDHWATWLQEY ARLDKDL
LQSRN DHWATWLQ Y ARLDKDL
LQSRNQDHWATWLQAY R:R[aga] ARLDKDL
KV389755.1:subs63676 ccaaacgctgatccgtAGGTGAGCT Intron 7 CAGAgccgagc
taggaaaagccgtaca <2-----[63726:63799]-2> cgtaaat
ggcgcgccgccgcggc cggcgcg
SPP00000362_2.0 570 EGAGDAAAWQAERVRVMRASNPKYVLRNYIAQNAIEAAERGDFSEAST
EGAGDAAAWQAERVRVMRASNPKYVLRNYIAQNAIEAAERGDFSEAST
EGAGDAAAWQAERVRVMRASNPKYVLRNYIAQNAIEAAERGDFSEAST
KV389755.1:subs63822 ggggggggtcggcgcgacgaacatgcaatagcagaggggcggttggaa
agcgacccgacagtgttgcgacaattgaatcaactaccaggatcacgc
gccacctcggcgtgtggtccccgtggacccggcccgtcgcgccagaca
SPP00000362_2.0 618 VRQVLKLLETPYQCEAGTATEPEATE
V++VLKLLETPY CEAG ATEPEATE
VQRVLKLLETPYHCEAGAATEPEATE
KV389755.1:subs63966 TGACTAA Intron 8 CAGgccgcaccgactctgggggagcggag
<0-----[63966:64032]-0>tagttattaccaagacgcccacacca
tggaggaggctcccgagccagtgcgg
SPP00000362_2.0 644 ARGATGGQHSYSSKPPLWAAELCVT
TGGQ SYSSKPPLWAAELCVT
P---TGGQRSYSSKPPLWAAELCVT
KV389755.1:subs64111 c aggccttaaaccctgggctga
c cggagcaggacctgccatgtc
g tcggtccccgtgcgaaagtgg
//
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
>KV389755.1:subseq(2867310,100476).pep
MAARRVAVCASLAATRPLPLGRRRLSPVPRSALSGAAMEPAPRWLAGLRFDNRALRALPV
ETPPAGPEGAWTTPRLVPGACFTRVRPTPLRQPRLVALSEPALALLGLGAPPAPEAEAEA
ALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGP
TPFSRQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVARDVFYDGNPKYEK
CTVVLRIASTFIRFGSFEIFKSADEHTGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHA
SDNVQRNAAFFREVTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDRYDP
DHVCNASDNTGRYAYSKQPEVCKWNLRKLAEALQPELPLELGEAILAEEFDAEFQRHYLQ
KMRRKLGLVRVELEEDGVLVSKLLQTMHLTGADFTNTFYLLSSFLVDPESPGLAEFLARL
MEQCASLEELRQAFRPQMDPRQLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSQLE
QLSAAELQSRNQDHWATWLQAYRARLDKDLEGAGDAAAWQAERVRVMRASNPKYVLRNYI
AQNAIEAAERGDFSEASTVQRVLKLLETPYHCEAGAATEPEATEPTGGQRSYSSKPPLWA
AELCVT
//
>KV389755.1:subseq(2867310,100476).[49922:64176].sp
ATGGCCGCGCGCAGGGTCGCGGTCTGCGCCTCGCTCGCTGCTACCCGACCCCTGCCCCTC
GGCCGCCGCCGCCTGTCGCCCGTGCCCCGCTCTGCGTTGTCGGGCGCCGCCATGGAGCCT
GCGCCGCGCTGGCTGGCGGGACTGCGCTTCGACAACCGCGCTCTGCGCGCGCTGCCGGTG
GAGACGCCGCCTGCCGGTCCCGAGGGCGCCTGGACCACGCCGCGGCTCGTGCCCGGGGCC
TGCTTCACCCGCGTGCGGCCCACCCCGCTGCGGCAGCCCCGCCTCGTGGCGCTGTCGGAG
CCCGCTCTGGCGCTGCTGGGCCTGGGGGCGCCGCCCGCGCCCGAGGCCGAAGCCGAGGCC
GCGTTGTTCTTCAGCGGCAACGCGCTCCTGCCGGGCGCCGAGCCCGCCGCGCACTGCTAC
TGCGGCCACCAGTTCGGCCAGTTCGCCGGGCAGCTGGGCGACGGCGCCGCCATGTACCTA
GGCGAGGTGTGCACGGCGGCCGGCGAGCGCTGGGAGCTGCAGCTCAAGGGCGCCGGGCCC
ACGCCCTTCTCCAGACAGGCCGACGGTCGCAAGGTCCTACGGTCAAGCATTCGGGAGTTC
CTGTGCAGCGAAGCCATGTTCCACCTGGGGGTCCCCACCACACGGGCTGGTGCCTGCGTC
ACGTCTGAGTCCACGGTGGCGCGTGATGTGTTCTATGATGGTAATCCCAAATATGAAAAA
TGCACAGTTGTGTTGCGTATAGCTTCCACTTTCATAAGGTTTGGATCCTTTGAGATTTTT
AAGTCCGCAGATGAGCACACGGGGCGCGCAGGCCCCAGCGTGGGGAGGAACGACATTCGC
GTGCAGCTGCTCGACTACGTCATCAGCTCCTTCTACCCCGAGATCCAGGCTGCTCACGCC
AGCGACAACGTGCAGAGAAATGCCGCCTTCTTCCGGGAGGTGACACGGCGCACGGCGCGG
ATGGTGGCCGAGTGGCAGTGCGTAGGCTTCTGCCACGGCGTGCTTAACACCGACAACATG
AGCATCCTGGGGCTGACCATCGACTACGGGCCCTTCGGCTTCCTGGACAGGTACGACCCC
GACCACGTGTGCAATGCCTCAGACAACACCGGCCGCTACGCGTACAGCAAGCAGCCCGAG
GTGTGCAAGTGGAACCTGCGGAAGCTGGCTGAGGCGCTGCAGCCGGAGCTGCCCCTGGAG
CTGGGCGAGGCCATCCTGGCCGAGGAGTTTGACGCCGAGTTCCAAAGGCACTACCTGCAG
AAGATGCGAAGGAAACTGGGCCTCGTGCGGGTGGAGCTGGAGGAAGACGGGGTGCTGGTG
TCCAAGCTCCTGCAGACCATGCACCTGACTGGTGCTGACTTCACAAACACCTTCTACTTG
CTGAGCTCCTTCCTGGTGGATCCGGAGTCACCGGGCCTGGCGGAGTTCCTGGCCAGGCTG
ATGGAGCAGTGTGCTTCCCTGGAGGAGCTGAGGCAAGCCTTCCGGCCCCAGATGGATCCC
CGGCAGCTGTCCATGATGTTGATGCTGGCACAGTCAAACCCGCAGCTGTTCGCGCTCATG
GGCACCCGGGCAGGCATCGCCAGGGAGCTGGAGCGCGTGGAGCAGCAGTCTCAGCTGGAA
CAGCTGAGCGCGGCCGAGCTGCAGAGCAGGAACCAGGACCACTGGGCCACCTGGCTCCAG
GCGTACAGAGCCCGGCTGGACAAGGACCTGGAGGGCGCCGGAGACGCCGCTGCCTGGCAG
GCCGAGCGTGTGCGTGTGATGCGTGCCAGCAACCCCAAGTATGTGCTGAGAAACTACATC
GCGCAGAACGCCATCGAGGCTGCCGAGCGCGGGGACTTCTCAGAGGCAAGCACAGTTCAG
CGGGTACTGAAGCTACTGGAGACCCCTTACCACTGCGAGGCAGGGGCCGCCACAGAGCCT
GAGGCCACGGAGCCGACTGGCGGGCAGCGTTCCTACAGCAGCAAGCCTCCGCTCTGGGCA
GCAGAACTGTGTGTGACG
//
KV389755.1:subseq(2867310,100476) GeneWise match 49922 64176 1404.78 + . KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise cds 49922 50475 0.00 + 0 KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise intron 50476 54740 0.00 + . KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise cds 54741 54944 0.00 + 1 KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise intron 54945 56617 0.00 + . KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise cds 56618 56798 0.00 + 1 KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise intron 56799 58215 0.00 + . KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise cds 58216 58346 0.00 + 0 KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise intron 58347 58640 0.00 + . KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise cds 58641 58921 0.00 + 1 KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise intron 58922 62498 0.00 + . KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise cds 62499 62649 0.00 + 2 KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise intron 62650 63539 0.00 + . KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise cds 63540 63725 0.00 + 1 KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise intron 63726 63799 0.00 + . KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise cds 63800 63965 0.00 + 1 KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise intron 63966 64032 0.00 + . KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise cds 64033 64176 0.00 + 0 KV389755.1:subseq(2867310,100476)-genewise-prediction-1
//
genewise output
Score 24.31 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000362_2.0 58 LPVETPPAGPEGASTTPRLVP-GACFTRVRPTPLRQPR
+P E PP P T RL+P G ++ PTP PR
VPAEPPPQKPLQPPPTQRLLPTGPAAPQMSPTPRPPPR
KV389755.1:sub-24798 gcggccccaccccccacccccagcggccaacacccccc
tccacccaactaccccagttccgccccatgcccgcccg
ctcaatcagtcgttcagcgttagtttcggcctcccaag
//
>KV389755.1:subseq(2867310,100476).pep
VPAEPPPQKPLQPPPTQRLLPTGPAAPQMSPTPRPPPR
//
>KV389755.1:subseq(2867310,100476).[24798:24683].sp
GTCCCTGCCGAACCACCTCCCCAAAAGCCTCTCCAGCCTCCTCCCACACAGCGCCTGCTT
CCTACAGGGCCTGCTGCTCCCCAGATGAGCCCCACTCCCCGCCCCCCACCACGG
//
KV389755.1:subseq(2867310,100476) GeneWise match 24798 24685 24.31 - . KV389755.1:subseq(2867310,100476)-genewise-prediction-1
KV389755.1:subseq(2867310,100476) GeneWise cds 24798 24685 0.00 - 0 KV389755.1:subseq(2867310,100476)-genewise-prediction-1
//