genewise output
Score 554.13 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000309_2.0 1 MGLPGPGLWLKRLWVLLEVAVHVAVGKVLLTLFPDRVKKNILAMGDKTG
MGLPGPGLWLKRLWVLLEVAVHVAVGK+LLTLFPDRVKKNILAMGDKTG
MGLPGPGLWLKRLWVLLEVAVHVAVGKLLLTLFPDRVKKNILAMGDKTG
KV389748.1:subs50000 agccgcgctcaactgctggggcggggacccattcgagaaaacgaggaag
tgtcgcgtgtagtgtttatctatctgatttcttcagtaaattctgaacg
gggcgaggggggcggcgggtgtgtgcagtgagtacacggcaacgccggt
SPP00000309_2.0 50 MTRNPNFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV
MTRNPNFSHDNWIPTFFSTQYFWFVLKVRWQRLEDT ELGGLAPNCPVV
MTRNPNFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTAELGGLAPNCPVV
KV389748.1:subs50147 aaaacatacgatacattaacttttgcagctcccggaggcggcgcatcgg
tcgacatgaaagtccttgcaatgtttatggagtaaccatggtccagctt
gcgcaccccccgcgctcccgtcgccggctggaagcgtgagtgcaccagc
SPP00000309_2.0 99 HLSGQRCNIWDFMQ NRPLVLNFG
HLSGQRCNIWDFMQ NRPLVLNFG
HLSGQRCNIWDFMQ G:G[gga] NRPLVLNFG
KV389748.1:subs50294 cctgcataatgtacGGTCAGGA Intron 1 CAGGAaaccgcatg
atcgaggatgatta <1-----[50337:60437]-1> agctttatg
ccaaggcctgctga cgcgggtta
SPP00000309_2.0 123 SCTXPSFMFKFDQFKRLTEDFSSVADFLIIYIEEAHAS
SCTXPSFMFKFDQFKRLTEDFSSVADFLIIYIEEAHAS
SCTXPSFMFKFDQFKRLTEDFSSVADFLIIYIEEAHAS
KV389748.1:subs60467 atatcttatatgctaacaggtatgggtcaatagggcgt
ggcgcctttataatagtcaatgctcattttataacacc
ttcatatgcatcacgattactttaattcctctaaataa
SPP00000309_2.0 161 GWAFKNNVDIRNHQNLQDRLQAA
GWAFKNNVDIRNHQNLQDRLQAA
D:D[gat] GWAFKNNVDIRNHQNLQDRLQAA
KV389748.1:subs60581 GGTACAGG Intron 2 TAGATgtgtaaaggaaaccaccgcccgg
<1-----[60582:65151]-1> ggctaaatatgaaaataagtacc
cgttgccgccgtcgctgccggac
SPP00000309_2.0 185 HLLLARSPQCPVVVDTMQNQSSELYAALPERLYIIQEGRILYK
HLLLARSPQCPVVVDTMQNQSSELYAALPERLYIIQEGRILYK
HLLLARSPQCPVVVDTMQNQSSELYAALPERLYIIQEGRILYK
KV389748.1:subs65223 ccccgaacctcggggaacacaagctggccgactaacggaacta
atttcggcagctttactaaaggatacctcagtattaaggttaa
tgggcgccgctgggcgggcgctgccaaggagccacggcgcccg
SPP00000309_2.0 228 GKSGPWNYNPEEVRDVLEKLHS
GKSGPWNYNPEEVRDVLEKLHS
GKSGPWNYNPEEVRDVLEKLHS
KV389748.1:subs65352 GTGGTGA Intron 3 CAGgatgctatacgggcggcgacca
<0-----[65352:68363]-0>gacgcgaaacaatgattaatag
tacctgcctagattttgaactt
//
Making a G in phase 1 intron
Making a D in phase 1 intron
>KV389748.1:subseq(962971,100341).pep
MGLPGPGLWLKRLWVLLEVAVHVAVGKLLLTLFPDRVKKNILAMGDKTGMTRNPNFSHDN
WIPTFFSTQYFWFVLKVRWQRLEDTAELGGLAPNCPVVHLSGQRCNIWDFMQGNRPLVLN
FGSCTXPSFMFKFDQFKRLTEDFSSVADFLIIYIEEAHASDGWAFKNNVDIRNHQNLQDR
LQAAHLLLARSPQCPVVVDTMQNQSSELYAALPERLYIIQEGRILYKGKSGPWNYNPEEV
RDVLEKLHS
//
>KV389748.1:subseq(962971,100341).[50000:68429].sp
ATGGGGCTGCCCGGGCCAGGGCTGTGGCTGAAGAGGCTCTGGGTGCTCTTGGAGGTGGCT
GTGCATGTGGCTGTGGGCAAACTGCTTCTGACATTGTTTCCAGACAGAGTCAAGAAGAAC
ATACTAGCCATGGGCGACAAGACGGGTATGACCAGGAACCCAAACTTCAGCCACGACAAC
TGGATCCCGACCTTTTTCAGCACCCAGTATTTCTGGTTCGTCCTGAAGGTCCGTTGGCAG
CGACTAGAGGACACGGCTGAGCTAGGGGGTCTGGCCCCAAACTGCCCAGTGGTCCACCTC
TCAGGACAGAGGTGCAACATTTGGGACTTTATGCAAGGAAACAGGCCCCTGGTGCTGAAT
TTTGGAAGTTGTACCTGACCTTCATTTATGTTCAAATTTGACCAATTCAAGAGACTTACT
GAAGACTTTAGTTCTGTAGCAGATTTTCTCATCATTTACATTGAAGAAGCACATGCATCA
GATGGCTGGGCTTTTAAGAACAACGTGGACATCAGGAATCACCAGAACCTTCAGGACCGC
CTGCAGGCAGCCCATCTGCTGCTGGCCAGGAGCCCCCAGTGCCCTGTGGTGGTGGACACG
ATGCAGAACCAGAGCAGTGAGCTCTACGCAGCACTGCCGGAAAGGCTCTACATAATCCAG
GAGGGCAGGATCCTCTACAAGGGTAAATCCGGCCCTTGGAACTACAATCCAGAGGAAGTT
CGTGATGTTCTGGAAAAACTCCATAGT
//
KV389748.1:subseq(962971,100341) GeneWise match 50000 68429 554.13 + . KV389748.1:subseq(962971,100341)-genewise-prediction-1
KV389748.1:subseq(962971,100341) GeneWise cds 50000 50336 0.00 + 0 KV389748.1:subseq(962971,100341)-genewise-prediction-1
KV389748.1:subseq(962971,100341) GeneWise intron 50337 60437 0.00 + . KV389748.1:subseq(962971,100341)-genewise-prediction-1
KV389748.1:subseq(962971,100341) GeneWise cds 60438 60581 0.00 + 2 KV389748.1:subseq(962971,100341)-genewise-prediction-1
KV389748.1:subseq(962971,100341) GeneWise intron 60582 65151 0.00 + . KV389748.1:subseq(962971,100341)-genewise-prediction-1
KV389748.1:subseq(962971,100341) GeneWise cds 65152 65351 0.00 + 2 KV389748.1:subseq(962971,100341)-genewise-prediction-1
KV389748.1:subseq(962971,100341) GeneWise intron 65352 68363 0.00 + . KV389748.1:subseq(962971,100341)-genewise-prediction-1
KV389748.1:subseq(962971,100341) GeneWise cds 68364 68429 0.00 + 0 KV389748.1:subseq(962971,100341)-genewise-prediction-1
//
genewise output
Score 18.65 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000309_2.0 91 LAPNCPVVHLS
L P CP +HLS
LEPPCPALHLS
KV389748.1:sub-32662 cgcctcgccct
taccgcctatc
tgagcgtgtat
//
>KV389748.1:subseq(962971,100341).pep
LEPPCPALHLS
//
>KV389748.1:subseq(962971,100341).[32662:32628].sp
CTTGAGCCACCGTGCCCGGCTCTGCATCTATCT
//
KV389748.1:subseq(962971,100341) GeneWise match 32662 32630 18.65 - . KV389748.1:subseq(962971,100341)-genewise-prediction-1
KV389748.1:subseq(962971,100341) GeneWise cds 32662 32630 0.00 - 0 KV389748.1:subseq(962971,100341)-genewise-prediction-1
//