genewise output
Score 458.40 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000029_1.0 1 MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPV
MNNQARTPAPSSARTSTSVRASTPTRTPTP+RTPT VRTRTPIRTLTP
MNNQARTPAPSSARTSTSVRASTPTRTPTPVRTPTAVRTRTPIRTLTPS
KV389732.1:subs49565 aaacgcacgcttgcatatgcgtacacacacgcacaggcacacacacact
taaacgcccccccgcccctgcccccgcccctgcccctgcgcctgctccc
gtcgggccccctcgcaggcattcgcgagtgcgtgcgcgtgcccgcgcct
SPP00000029_1.0 50 LTPSPAGTSPLVLTPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVP
L AGT LV T PA+I LVPTPA A VP P PA PTP+P
L----AGTPALVPTTTPARISRLVPTPAPAWTSTPVPTPTPARTPTPIP
KV389732.1:subs49712 c ggacgcgcaaacgcatccgcacgcgtatacgcacacgcacacac
t cgcccttccccccgtcgttccccccgcccctccccccgcccctc
g cgtctgcgtctgcgcctgcgtgtgcgcctacgtttccgcatgcg
SPP00000029_1.0 99 T----------PVPVRNPTPVPTPARTLTP---PVRVPAPA----PAQL
T P P R P PVP PA P P VPAPA PA +
TLVRTLTPVRLPAPARIPAPVPAPAPVPVPVPVPAPVPAPALALSPALV
KV389732.1:subs49847 acgcacacgcccgcgcacgcgcgcgcgcgcgcgcgcgcgcgcgctcgcg
cttgctcctgtccccgtccctccccctctctctccctcccctctccctt
tgtgcgtacgtacccgagcgcgcgcgcgcgcgcacccgcgcgcacatgc
SPP00000029_1.0 131 LAGIRAALPVLDSYLAPALPLDPPPEPAPE--LPLLPEEDPEPAPSLKL
LAGIRA LPVLDSY A ALP DPPPEPAPE + EED EPAPSL+L
LAGIRATLPVLDSYPASALPWDPPPEPAPEPRVSVSSEEDREPAPSLRL
KV389732.1:subs49994 cggacgaccgtgttcgtgcctgcccgcgcgccgtgttgggcgcgcacac
tcgtgcctcttacacccctcgacccacccacgtctccaaagacccgtgt
gcgtgcgcccgcccgcgcatgtgcgatcgggcgagacggttggggcggc
SPP00000029_1.0 178 IPSVSSEAGPAPGPLPTRTPLAANSPGPTLDFTFRADPSAIGLADPPIP
+PSVS E GPA GP P TPLA N PGPTLDFT AD SA GLADP IP
VPSVSGETGPAAGPPPAHTPLATNPPGPTLDFT--ADSSATGLADPTIP
KV389732.1:subs50141 gctgtggagcgggcccgcaccgaaccgcacgta ggttgagcggcaac
tcctcgacgcccgccccacctccaccgcctatc caccccgtcacctc
cggcccgtgccggctcgctggcgcacgcggccc acggctgggtcctc
SPP00000029_1.0 227 SPVPSPILGTIPSAISLQNCTETFPSSSENFALDKRVLIRVTY
S VP+PILGTIPSA SL N TE+F S+SE+FALDKRV IRVTY
SSVPAPILGTIPSAASLLNSTESFVSASESFALDKRVPIRVTY
KV389732.1:subs50282 atgcgcacgaactggttcatagatgtgagatgcgaagcacgat
gctcccttgctcccccttaccagttccgagtctaagtctgtca
ctctgccggtcggcccagttcacccactgccggcggcttagcc
SPP00000029_1.0 270 CGLXS-----------YSLRYIL
G ++ +YIL
-:X[tga] LGEVPDSPPLRPHDPVFAPQYIL
KV389732.1:subs50411 TGGTGAGGA Intron 1 AAGAcgggcgtccccccgcgtgcctac
<2-----[50413:52387]-2> tgatcaccctgcaacttccaatt
gaacttttcgactccctctgcta
SPP00000029_1.0 282 LKKSLEQQFPNHLLF EEDRAAQATGE
LKKSLEQ+FP+ LLF EEDRAAQATG+
LKKSLEQRFPDRLLF EEDRAAQATGD
KV389732.1:subs52458 caaacgcctcgccctGTAAGTA Intron 2 CAGgggaggcgagg
taagtaagtcagttt<0-----[52503:52587]-0>aaagccaccga
gagcgggatatcact ggcatcgtagt
SPP00000029_1.0 308 FEVFVNGRLVHSKK RGDGFVNESRLQ
FEVFV+GRLVHSKK RGDGFV+E++LQ
FEVFVDGRLVHSKK RGDGFVDEAKLQ
KV389732.1:subs52621 tggtgggacgctaaGTGATTC Intron 3 CAGagggtggggacc
tatttaggttacaa<0-----[52663:52755]-0>ggagttaacata
tagtatgagctcgg gttctgtgcggg
SPP00000029_1.0 334 KIVSVIDEEIKKR
KIVS+IDEEIKKR
KIVSIIDEEIKKR
KV389732.1:subs52792 aagaaagggaaaa
attgttaaataag
atgctttggcggg
//
Making a X in phase 2 intron
>KV389732.1:subseq(2043714,100413).pep
MNNQARTPAPSSARTSTSVRASTPTRTPTPVRTPTAVRTRTPIRTLTPSLAGTPALVPTT
TPARISRLVPTPAPAWTSTPVPTPTPARTPTPIPTLVRTLTPVRLPAPARIPAPVPAPAP
VPVPVPVPAPVPAPALALSPALVLAGIRATLPVLDSYPASALPWDPPPEPAPEPRVSVSS
EEDREPAPSLRLVPSVSGETGPAAGPPPAHTPLATNPPGPTLDFTADSSATGLADPTIPS
SVPAPILGTIPSAASLLNSTESFVSASESFALDKRVPIRVTYXLGEVPDSPPLRPHDPVF
APQYILLKKSLEQRFPDRLLFEEDRAAQATGDFEVFVDGRLVHSKKRGDGFVDEAKLQKI
VSIIDEEIKKR
//
>KV389732.1:subseq(2043714,100413).[49565:52830].sp
ATGAATAACCAGGCGCGGACCCCCGCCCCCTCCTCTGCCCGGACCTCAACGTCGGTCCGA
GCTTCTACCCCGACCCGGACACCGACTCCGGTCCGGACTCCGACCGCGGTCCGGACTCGG
ACCCCCATCCGGACCCTGACCCCCTCTCTGGCCGGGACTCCCGCTCTGGTCCCGACTACC
ACTCCGGCCCGGATCTCCCGTCTGGTCCCGACTCCGGCTCCGGCCTGGACCTCCACTCCA
GTCCCGACTCCTACTCCCGCCCGGACCCCAACTCCGATCCCGACTCTGGTTCGGACCCTG
ACTCCAGTCCGGCTTCCAGCCCCCGCCCGGATACCGGCCCCGGTCCCGGCCCCGGCCCCG
GTCCCGGTCCCGGTCCCGGTCCCAGCCCCCGTCCCGGCCCCGGCCCTGGCCCTATCCCCA
GCTCTGGTCCTGGCCGGGATTCGGGCCACGCTCCCCGTCTTGGACTCCTACCCGGCCTCG
GCCCTACCTTGGGATCCGCCCCCGGAACCTGCCCCGGAGCCGCGCGTGTCAGTGTCATCC
GAGGAGGATCGTGAGCCGGCGCCGAGCCTGAGGCTCGTCCCGTCGGTCTCCGGCGAGACT
GGGCCCGCCGCGGGGCCCCCTCCCGCGCACACTCCGCTGGCCACGAACCCACCCGGGCCC
ACGCTGGACTTCACCGCAGACTCGTCGGCCACTGGGCTGGCGGATCCCACCATTCCCAGC
TCTGTCCCTGCGCCCATCCTGGGGACTATCCCGTCGGCCGCCTCCTTACTGAATTCTACC
GAAAGCTTCGTCTCAGCCAGTGAGAGCTTCGCGCTGGACAAGAGGGTCCCTATTCGAGTG
ACCTACTGACTGGGAGAAGTCCCTGATTCTCCTCCCCTGCGACCCCATGACCCCGTCTTT
GCCCCTCAGTACATTCTACTGAAAAAGAGCCTGGAGCAGCGATTTCCAGATCGCCTACTC
TTTGAGGAGGACAGAGCTGCCCAGGCTACAGGGGATTTTGAAGTGTTTGTAGATGGGAGA
CTGGTCCATTCCAAGAAGAGGGGTGATGGCTTTGTGGATGAGGCCAAGCTGCAGAAAATT
GTGAGCATTATTGATGAGGAGATCAAGAAGAGG
//
KV389732.1:subseq(2043714,100413) GeneWise match 49565 52830 487.36 + . KV389732.1:subseq(2043714,100413)-genewise-prediction-1
KV389732.1:subseq(2043714,100413) GeneWise cds 49565 50412 0.00 + 0 KV389732.1:subseq(2043714,100413)-genewise-prediction-1
KV389732.1:subseq(2043714,100413) GeneWise intron 50413 52387 0.00 + . KV389732.1:subseq(2043714,100413)-genewise-prediction-1
KV389732.1:subseq(2043714,100413) GeneWise cds 52388 52502 0.00 + 1 KV389732.1:subseq(2043714,100413)-genewise-prediction-1
KV389732.1:subseq(2043714,100413) GeneWise intron 52503 52587 0.00 + . KV389732.1:subseq(2043714,100413)-genewise-prediction-1
KV389732.1:subseq(2043714,100413) GeneWise cds 52588 52662 0.00 + 0 KV389732.1:subseq(2043714,100413)-genewise-prediction-1
KV389732.1:subseq(2043714,100413) GeneWise intron 52663 52755 0.00 + . KV389732.1:subseq(2043714,100413)-genewise-prediction-1
KV389732.1:subseq(2043714,100413) GeneWise cds 52756 52830 0.00 + 0 KV389732.1:subseq(2043714,100413)-genewise-prediction-1
//
genewise output
Score 29.08 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000029_1.0 178 IPSVSSEAGPAPGPLPTRTPLAANSPGPTLDFTFRADPSAIGLADPPIP
+P + GP PG P R + PGP L + P GL P P
VPGADPKVGPRPGRSPRRGAWPESRPGPELGIGPGPGPGR-GLGPGPGP
KV389732.1:sub-50072 gcgggcaggcacgaacacggtcgtccgcgcgagcgcgcgc gcgcgcgc
tcgcacatgcgcgggcgggcgcacgcgcatgtgcgcgcgg gtgcgcgc
tgggtcgaggggtgtaagaggcacgaaagggagaggggag ggagagag
SPP00000029_1.0 227 SPVPSPILGTI
P P P G +
GPGPGPGPGPV
KV389732.1:sub-49928 gcgcgcgcgcg
gcgcgcgcgct
agggggaggga
//
>KV389732.1:subseq(2043714,100413).pep
VPGADPKVGPRPGRSPRRGAWPESRPGPELGIGPGPGPGRGLGPGPGPGPGPGPGPGPV
//
>KV389732.1:subseq(2043714,100413).[50072:49894].sp
GTTCCGGGGGCGGATCCCAAGGTAGGGCCGAGGCCGGGTAGGAGTCCAAGACGGGGAGCG
TGGCCCGAATCCCGGCCAGGACCAGAGCTGGGGATAGGGCCAGGGCCGGGGCCGGGACGG
GGGCTGGGACCGGGACCGGGACCGGGACCGGGGCCGGGGCCGGGACCGGGGCCGGTA
//
KV389732.1:subseq(2043714,100413) GeneWise match 50072 49896 29.08 - . KV389732.1:subseq(2043714,100413)-genewise-prediction-1
KV389732.1:subseq(2043714,100413) GeneWise cds 50072 49896 0.00 - 0 KV389732.1:subseq(2043714,100413)-genewise-prediction-1
//