genewise output
Score 16.31 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000013_1.0 19 RLLLATVLQAV
RL+ TVLQAV
RLIWLTVLQAV
KV389687.1:subs 3096 acatcagccgg
gttgtcttact
gttgcatggta
//
>KV389687.1:subseq(3301047,100188).pep
RLIWLTVLQAV
//
>KV389687.1:subseq(3301047,100188).[3096:3128].sp
AGGCTTATTTGGCTCACAGTTCTGCAGGCTGTA
//
KV389687.1:subseq(3301047,100188) GeneWise match 3096 3128 16.31 + . KV389687.1:subseq(3301047,100188)-genewise-prediction-1
KV389687.1:subseq(3301047,100188) GeneWise cds 3096 3128 0.00 + 0 KV389687.1:subseq(3301047,100188)-genewise-prediction-1
//
genewise output
Score 203.45 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000013_1.0 1 MVAMAAGPSGCLVPAFGLRLLLATVLQA
++AMAAGP G L+PAF LRLL ATVLQ
VIAMAAGPGGWLLPAFQLRLLFATVLQV
KV389687.1:sub-59743 gagagggcggtctcgtccctttgagccgGTGAGTG Intron 1
ttctccgcgggttcctatgtttccttat<0-----[59659:50189]
gagggtggtggggggtgagggcgtgtag
SPP00000013_1.0 29 VSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCC
VSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCC
VSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCC
KV389687.1:sub-50191 CAGgtgtgggtttggtagtgttaatctattgccgctaccccgcgtagtt
-0>tcctgcatccacggatgtcgattggcgattgatattatacaggggg
gtttgagtacgacagacctccgccctttttagccgtggtttcaact
SPP00000013_1.0 75 QEEAQFETKK LYAGAILEVCGXKLGR
QEEAQFETKK LYAGAILEVCGXKLGR
QEEAQFETKK LYAGAILEVCGXKLGR
KV389687.1:sub-50050 cgggctgaaaGTACTGT Intron 2 TAGctgggacggtgtatga
aaacatacaa<0-----[50020:31993]-0>tacgcttatgggatgg
gaaaatacag gtaatttgttaaagag
SPP00000013_1.0 101 FPQVQ CPWFRPCIKAFGRQWEHC
FPQVQ CP FRPC+KAFGRQWEHC
FPQVQ V:V[gta] CPRFRPCFKAFGRQWEHC
KV389687.1:sub-31944 tccgcGGTATATA Intron 3 TAGTAtcatacttagtgcctgct
tcata <1-----[31928:14501]-1> gcgtgcgtactggagaag
ctaca tggcacttattaaagatc
//
Making a V in phase 1 intron
>KV389687.1:subseq(3301047,100188).pep
VIAMAAGPGGWLLPAFQLRLLFATVLQVVSAFGAEFSSEACRELGFSSNLLCSSCDLLGQ
FNLLQLDPDCRGCCQEEAQFETKKLYAGAILEVCGXKLGRFPQVQVCPRFRPCFKAFGRQ
WEHC
//
>KV389687.1:subseq(3301047,100188).[59743:14443].sp
GTGATAGCGATGGCGGCTGGGCCGGGTGGGTGGCTGTTGCCGGCGTTTCAGCTACGGTTG
TTGTTCGCGACTGTGCTTCAAGTGGTGTCTGCTTTTGGGGCAGAGTTTTCATCCGAGGCA
TGCAGAGAGTTAGGCTTCTCTAGCAACTTGCTCTGCAGCTCTTGTGATCTTCTTGGACAG
TTCAACCTGCTTCAGCTGGATCCTGATTGCAGAGGATGCTGTCAGGAAGAAGCACAATTT
GAAACCAAAAAGCTGTATGCAGGAGCTATTCTTGAGGTTTGTGGATGAAAATTGGGAAGG
TTCCCTCAAGTCCAAGTATGTCCGAGGTTCAGACCCTGTTTTAAAGCTTTTGGACGACAA
TGGGAACATTGC
//
KV389687.1:subseq(3301047,100188) GeneWise match 59743 14445 203.45 - . KV389687.1:subseq(3301047,100188)-genewise-prediction-1
KV389687.1:subseq(3301047,100188) GeneWise cds 59743 59660 0.00 - 0 KV389687.1:subseq(3301047,100188)-genewise-prediction-1
KV389687.1:subseq(3301047,100188) GeneWise intron 59659 50189 0.00 - . KV389687.1:subseq(3301047,100188)-genewise-prediction-1
KV389687.1:subseq(3301047,100188) GeneWise cds 50188 50021 0.00 - 0 KV389687.1:subseq(3301047,100188)-genewise-prediction-1
KV389687.1:subseq(3301047,100188) GeneWise intron 50020 31993 0.00 - . KV389687.1:subseq(3301047,100188)-genewise-prediction-1
KV389687.1:subseq(3301047,100188) GeneWise cds 31992 31929 0.00 - 0 KV389687.1:subseq(3301047,100188)-genewise-prediction-1
KV389687.1:subseq(3301047,100188) GeneWise intron 31928 14501 0.00 - . KV389687.1:subseq(3301047,100188)-genewise-prediction-1
KV389687.1:subseq(3301047,100188) GeneWise cds 14500 14445 0.00 - 2 KV389687.1:subseq(3301047,100188)-genewise-prediction-1
//