genewise output
Score 236.94 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000360_2.0    1 LPPLPLLLLLAALAAPATAATTYRPDWNRLRGLTRARVE           
                     LPPLPLLLLLAALAAPATAATTYRPDWNRLRGLTRARVE           
                     LPPLPLLLLLAALAAPATAATTYRPDWNRLRGLTRARVE           
KV389684.1:subs47952 tcccccccccggcggcgaggaatccgtaccagcacgcgg           
                     tcctctttttcctcccccccccagcagagtggtcgcgta           
                     gtggggggtcggtgtacacctctggcgctgacgcccgag           


SPP00000360_2.0   40                        TCGGXQLNRLKE               
                                            TCGGXQLNRLKE               
                                            TCGGXQLNRLKE               
KV389684.1:subs48069 GTGAGTA  Intron 1   CAGatggtccaccag               
                     <0-----[48069:49471]-0>cggggatagtaa               
                                            ctgaaggccagg               


SPP00000360_2.0   52                        VKAFVTQDIPF                
                                            VKAFVTQDIPF                
                                            VKAFVTQDIPF                
KV389684.1:subs49508 GTGAGTT  Intron 2   CAGgagtgacgact                
                     <0-----[49508:49723]-0>tacttcaatct                
                                            ggtcctgctac                


SPP00000360_2.0   63                           HNLVMKHLPGADPELVLLGRRYE 
                                               HNLVMKHLPGADPELVLLGRRYE 
                                Y:Y[tat]       HNLVMKHLPGADPELVLLGRRYE 
KV389684.1:subs49757 TAGTATCCT  Intron 3   CAGTcacgaacccgggcgcgccgcctg 
                       <2-----[49759:50115]-2> aatttaatcgcacattttgggaa 
                                               ccgggacctgcccgcgggccccg 


SPP00000360_2.0   87 ELE                       RIPLSEMTREEINALVQELGFYR 
                     ELE                       RIPLSEMTREEINALVQELGFYR 
                     ELE                       RIPLSEMTREEINALVQELGFYR 
KV389684.1:subs50186 gcgGTGAGGC  Intron 4   CAGcaccagaacggaagcgcgcgttc 
                     ata<0-----[50195:50272]-0>gtctgatcgaatacttaatgtag 
                     agg                       ctgccagccagccgggggccccc 


SPP00000360_2.0  113 KAAPDAQVPPEYVWAPARPPVETSDHADL                     
                     K APDAQVPPEYVWAPARPP ETSDH DL                     
                     KVAPDAQVPPEYVWAPARPPEETSDHTDL                     
KV389684.1:subs50342 aggcggcgccgtgtgcgaccggatgcagc                     
                     atccacatccaatgcccgccaaccaacat                     
                     gggccgggccgcgggctgcggatacctcg                     


//
Making a Y in phase 2 intron
>KV389684.1:subseq(1556918,100428).pep
LPPLPLLLLLAALAAPATAATTYRPDWNRLRGLTRARVETCGGXQLNRLKEVKAFVTQDI
PFYHNLVMKHLPGADPELVLLGRRYEELERIPLSEMTREEINALVQELGFYRKVAPDAQV
PPEYVWAPARPPEETSDHTDL
//
>KV389684.1:subseq(1556918,100428).[47952:50428].sp
TTGCCTCCGCTGCCGCTGCTGCTGCTTCTCGCGGCGCTTGCGGCTCCAGCCACAGCCGCC
ACTACCTATCGGCCGGACTGGAACCGTCTGAGAGGCCTGACCCGCGCCCGGGTAGAGACC
TGTGGGGGATGACAGCTGAACCGCCTAAAGGAGGTGAAGGCTTTCGTCACTCAGGACATT
CCATTCTATCACAACCTGGTGATGAAACACCTCCCTGGGGCCGACCCCGAGCTCGTGCTG
CTGGGCCGCCGCTACGAGGAACTGGAGCGCATTCCGCTCAGCGAAATGACCCGCGAAGAG
ATCAACGCGCTGGTGCAGGAGCTCGGCTTCTACCGCAAGGTGGCGCCCGACGCGCAGGTG
CCCCCCGAGTACGTGTGGGCGCCCGCTAGGCCCCCGGAGGAAACTTCAGACCACACTGAC
CTG
//
KV389684.1:subseq(1556918,100428)	GeneWise	match	47952	50428	236.94	+	.	KV389684.1:subseq(1556918,100428)-genewise-prediction-1
KV389684.1:subseq(1556918,100428)	GeneWise	cds	47952	48068	0.00	+	0	KV389684.1:subseq(1556918,100428)-genewise-prediction-1
KV389684.1:subseq(1556918,100428)	GeneWise	intron	48069	49471	0.00	+	.	KV389684.1:subseq(1556918,100428)-genewise-prediction-1
KV389684.1:subseq(1556918,100428)	GeneWise	cds	49472	49507	0.00	+	0	KV389684.1:subseq(1556918,100428)-genewise-prediction-1
KV389684.1:subseq(1556918,100428)	GeneWise	intron	49508	49723	0.00	+	.	KV389684.1:subseq(1556918,100428)-genewise-prediction-1
KV389684.1:subseq(1556918,100428)	GeneWise	cds	49724	49758	0.00	+	0	KV389684.1:subseq(1556918,100428)-genewise-prediction-1
KV389684.1:subseq(1556918,100428)	GeneWise	intron	49759	50115	0.00	+	.	KV389684.1:subseq(1556918,100428)-genewise-prediction-1
KV389684.1:subseq(1556918,100428)	GeneWise	cds	50116	50194	0.00	+	1	KV389684.1:subseq(1556918,100428)-genewise-prediction-1
KV389684.1:subseq(1556918,100428)	GeneWise	intron	50195	50272	0.00	+	.	KV389684.1:subseq(1556918,100428)-genewise-prediction-1
KV389684.1:subseq(1556918,100428)	GeneWise	cds	50273	50428	0.00	+	0	KV389684.1:subseq(1556918,100428)-genewise-prediction-1
//

genewise output
Score 21.52 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000360_2.0   72 PGADPELVLLGRRYEELERIP                             
                     P + PEL L  R Y    RIP                             
                     PSSHPELFLPAREYSAYPRIP                             
KV389684.1:sub-27079 cttccgcttcgcgttgtcaac                             
                     cccacatttccgaaccacgtc                             
                     acccagccgttgatatccaac                             


//
>KV389684.1:subseq(1556918,100428).pep
PSSHPELFLPAREYSAYPRIP
//
>KV389684.1:subseq(1556918,100428).[27079:27015].sp
CCATCCTCCCACCCAGAGCTCTTCTTGCCTGCTCGGGAATATTCAGCTTACCCCAGAATA
CCC
//
KV389684.1:subseq(1556918,100428)	GeneWise	match	27079	27017	21.52	-	.	KV389684.1:subseq(1556918,100428)-genewise-prediction-1
KV389684.1:subseq(1556918,100428)	GeneWise	cds	27079	27017	0.00	-	0	KV389684.1:subseq(1556918,100428)-genewise-prediction-1
//