genewise output
Score 17.95 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000358_2.0   38 IEHCTSXRVY                                        
                     + HCT  RVY                                        
                     MSHCTQIRVY                                        
KV389679.1:subs78952 aactacaagt                                        
                     tgagcatgta                                        
                     gccccaaaat                                        


//
>KV389679.1:subseq(2553092,100146).pep
MSHCTQIRVY
//
>KV389679.1:subseq(2553092,100146).[78952:78981].sp
ATGAGCCACTGCACCCAAATAAGAGTATAT
//
KV389679.1:subseq(2553092,100146)	GeneWise	match	78952	78981	17.95	+	.	KV389679.1:subseq(2553092,100146)-genewise-prediction-1
KV389679.1:subseq(2553092,100146)	GeneWise	cds	78952	78981	0.00	+	0	KV389679.1:subseq(2553092,100146)-genewise-prediction-1
//

genewise output
Score 232.66 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000358_2.0    1 MAPRGRKRKAEAAMVATTEKREKLANGGEGVEEATIVIEH          
                     MA RGRKRKAEAA+VATTEKREKLANGGEGVEEATIVIEH          
                     MASRGRKRKAEAAVVATTEKREKLANGGEGVEEATIVIEH          
KV389679.1:sub-50354 agtcgaacagggggggaagacgacgaggggggggaagagc          
                     tccgggagacaccttcccaagaatcaggagtaacctttaa          
                     gtccgggggtgcggccgcggaggggccggaggggctttgt          


SPP00000358_2.0   41                           TSXRVYGRNAAALSQALRLEAPE 
                                               TSXRVYGRNAAALSQALRLEAPE 
                                C:C[tgc]       TSXRVYGRNAAALSQALRLEAPE 
KV389679.1:sub-50234 TGGTGAGGG  Intron 1   TAGCaatcgtgcagggcacgcccggcg 
                       <2-----[50232:50148]-2> cgggtaggaccctgactgtacca 
                                               tcacttgcccgcgcgggcgacaa 


SPP00000358_2.0   65 LPVKVNPAKPRRGSFEVTLLRPDGS                         
                     LPVKVNPAKPRRGSFEVTLLRPDGS                         
                     LPVKVNPAKPRRGSFEVTLLRPDGS          S:S[agt]       
KV389679.1:sub-50077 ccgagacgaccagatggactccggaAGTGAGTG  Intron 2       
                     tctataccacggggtatcttgcagg <1-----[50001:49848]    
                     taaggcacgcggcccgggggcgccc                         


SPP00000358_2.0   90      AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
                          AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
                          AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
KV389679.1:sub-49850 CAGGTggctagaaagcccacatcgccgggggtaatct             
                     -1>  catgcgtaagccgatatcacaattaataaatc             
                          ggcgtgtgggcgcacactgtaggcaggggcgg             


//
Making a C in phase 2 intron
Making a S in phase 1 intron
>KV389679.1:subseq(2553092,100146).pep
MASRGRKRKAEAAVVATTEKREKLANGGEGVEEATIVIEHCTSXRVYGRNAAALSQALRL
EAPELPVKVNPAKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKY
LS
//
>KV389679.1:subseq(2553092,100146).[50354:49748].sp
ATGGCTTCCCGCGGGAGGAAGCGGAAGGCTGAGGCCGCGGTGGTCGCCACGACCGAGAAG
CGAGAGAAGCTGGCGAACGGCGGGGAGGGAGTGGAGGAGGCGACCATTGTTATTGAGCAT
TGCACTAGCTGACGCGTTTATGGGCGCAACGCCGCGGCCCTGAGCCAGGCGCTGCGCCTG
GAAGCCCCAGAACTTCCAGTAAAGGTGAACCCAGCCAAGCCCCGGAGGGGCAGCTTCGAG
GTGACGCTGTTGCGCCCGGACGGCAGCAGTGCGGAGCTCTGGACTGGGATTAAGAAGGGG
CCCCCGCGCAAACTCAAATTCCCTGAGCCTCAAGAGGTGGTCGAAGAGTTGAAGAAGTAC
CTGTCG
//
KV389679.1:subseq(2553092,100146)	GeneWise	match	50354	49750	232.66	-	.	KV389679.1:subseq(2553092,100146)-genewise-prediction-1
KV389679.1:subseq(2553092,100146)	GeneWise	cds	50354	50233	0.00	-	0	KV389679.1:subseq(2553092,100146)-genewise-prediction-1
KV389679.1:subseq(2553092,100146)	GeneWise	intron	50232	50148	0.00	-	.	KV389679.1:subseq(2553092,100146)-genewise-prediction-1
KV389679.1:subseq(2553092,100146)	GeneWise	cds	50147	50002	0.00	-	1	KV389679.1:subseq(2553092,100146)-genewise-prediction-1
KV389679.1:subseq(2553092,100146)	GeneWise	intron	50001	49848	0.00	-	.	KV389679.1:subseq(2553092,100146)-genewise-prediction-1
KV389679.1:subseq(2553092,100146)	GeneWise	cds	49847	49750	0.00	-	2	KV389679.1:subseq(2553092,100146)-genewise-prediction-1
//