genewise output
Score 17.48 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000380_2.0 193 NAWEHNSLTLQSP
N W ++SL SP
NVWRYHSLVFHSP
KV389661.1:subs54553 agtatcatgtctc
atggaagtttacc
tcggcttatctat
//
>KV389661.1:subseq(2195455,100227).pep
NVWRYHSLVFHSP
//
>KV389661.1:subseq(2195455,100227).[54553:54591].sp
AATGTCTGGAGGTACCATAGTTTAGTTTTCCATTCACCT
//
KV389661.1:subseq(2195455,100227) GeneWise match 54553 54591 17.48 + . KV389661.1:subseq(2195455,100227)-genewise-prediction-1
KV389661.1:subseq(2195455,100227) GeneWise cds 54553 54591 0.00 + 0 KV389661.1:subseq(2195455,100227)-genewise-prediction-1
//
genewise output
Score 530.08 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000380_2.0 1 MKTAENNRGTGSEGPRKRGLCVLCGLPGAGKSTFARALAHRLRQEQGWA
MKTAEN RGTGS+GP+KRGLCVLCGLP AGKSTFARALAHRLRQEQGWA
MKTAENTRGTGSDGPQKRGLCVLCGLPAAGKSTFARALAHRLRQEQGWA
KV389661.1:sub-52804 aaaggaaagagaggccacgctgctgccgggatatgcgcgcacccgcgtg
taccaacggcggagcaaggtgttggtcccgacctcgctcagtgaaaggc
ggccgccaaccctgggaacccccccctgaaagtcgcccccgagaggcgc
SPP00000380_2.0 50 VGVVAYDDVMPDAFLAGASALPA PSQ
VGVVAYDDVMPDAFLAGASALPA PSQ
VGVVAYDDVMPDAFLAGASALPA PSQ
KV389661.1:sub-52657 gggggtgggacggtcgggagccgGTCAGCC Intron 1 TAGctc
tgttcaaattcacttcgcgctcc<0-----[52588:50228]-0>cca
ccccgttccgacgtccgactagg acg
SPP00000380_2.0 76 WKLLRQELLKYLEYFLMAVINGCQMSAPPDRTEAMWEDFTTCLKDQDLI
WKLLRQELLKYLEYFLMAVINGCQMSAPP RTEAMWEDF TCLKDQDLI
WKLLRQELLKYLEYFLMAVINGCQMSAPPSRTEAMWEDFITCLKDQDLI
KV389661.1:sub-50218 tatcccgctatcgtttaggaagtcatgccaaaggatggtaattagcgca
gattgaattaataatttcttaggatccccggcactgaattcgtaaaatt
gagtagagggcgaccggtgttgtggtcaccgtacggattactagtatga
SPP00000380_2.0 125 FSAAFEARSCYLLTKTAVSRP------------
FSAAFEA+SCYLLTKTAVSRP
FSAAFEAQSCYLLTKTAVSRPLLLVLDDNFYYQ
KV389661.1:sub-50071 ttggtggctttctaaaggtactctgtggatttc
tccctacacgattcacctcgctttttaaataaa
ttaatgcgccccaaattttatgtgtgtctttta
SPP00000380_2.0 146 SLGFCQLFLDCPLETCLQRNGQR
SLGFCQLFLDCPLETCLQRNGQR
Y:N[aat] SLGFCQLFLDCPLETCLQRNGQR
KV389661.1:sub-49972 AGTATGAG Intron 2 CAGATttgttccttgtccgattcaagca
<1-----[49971:49697]-1> ctgtgatttagctacgtagagag
agctcgctattttgctaggtcgg
SPP00000380_2.0 170 PRALPAETIHLMGRKLEKPNPEKNAWEHNSLTLQSPACASGA
P+ALPA TI LMGRKLEKP+PEKNAWEHNSLTLQSPA ASGA
PQALPAATIRLMGRKLEKPSPEKNAWEHNSLTLQSPAGASGA
KV389661.1:sub-49625 ccgccggaaccagaacgacacgaagtgcaacaccacgggtgg
cactcccctgttggataacgcaaacgaaagtctagccgccgc
agagttgcccggaagaagcctgattgaccccaggtagttagc
SPP00000380_2.0 212 LEVTDLLLTALENPVKYAEDNME
LEVTDLLL+ALENPVKYAEDNME
S:S[agc] LEVTDLLLSALENPVKYAEDNME
KV389661.1:sub-49499 AGGTATTCC Intron 3 TAGCcggagttcagtgacgatgggaag
<2-----[49497:46971]-2> tatcatttgctaactaacaaata
gggttagcttgataaattgctga
SPP00000380_2.0 236 QK DTDRIICSTNILHTADVTLRRIVS
QK DTDRIICSTNILHTADVTLRRIVS
QK DTDRIICSTNILHTADVTLRRIVS
KV389661.1:sub-46900 caGTAAAGC Intron 4 TAGgagaaattaaaccagggaccaagt
aa<0-----[46894:46401]-0>acagttgccattaccatctggttc
ag cacatttaactttattgacaatat
SPP00000380_2.0 262 QTMKEAKG
QTMKEAKG
QTMKEAKG
KV389661.1:sub-46328 caaaggag
actaacag
gaggaaat
//
Making a N in phase 1 intron
Making a S in phase 2 intron
>KV389661.1:subseq(2195455,100227).pep
MKTAENTRGTGSDGPQKRGLCVLCGLPAAGKSTFARALAHRLRQEQGWAVGVVAYDDVMP
DAFLAGASALPAPSQWKLLRQELLKYLEYFLMAVINGCQMSAPPSRTEAMWEDFITCLKD
QDLIFSAAFEAQSCYLLTKTAVSRPLLLVLDDNFYYQNSLGFCQLFLDCPLETCLQRNGQ
RPQALPAATIRLMGRKLEKPSPEKNAWEHNSLTLQSPAGASGASLEVTDLLLSALENPVK
YAEDNMEQKDTDRIICSTNILHTADVTLRRIVSQTMKEAKG
//
>KV389661.1:subseq(2195455,100227).[52804:46303].sp
ATGAAGACCGCCGAGAACACCAGAGGAACCGGCAGCGATGGGCCGCAGAAACGAGGCCTC
TGCGTCCTCTGCGGCCTCCCTGCGGCAGGAAAATCGACTTTCGCGCGCGCCCTCGCCCAC
AGGCTACGGCAAGAGCAGGGCTGGGCCGTCGGCGTCGTCGCGTATGATGACGTCATGCCA
GACGCGTTTCTCGCCGGGGCAAGCGCTCTACCGGCGCCATCCCAGTGGAAATTGCTTCGA
CAGGAACTGTTGAAGTACCTGGAATACTTCTTGATGGCTGTGATTAATGGGTGTCAGATG
TCTGCCCCACCCAGCAGGACTGAAGCCATGTGGGAAGATTTTATAACCTGTTTAAAGGAT
CAAGATCTGATATTTTCTGCAGCATTTGAGGCCCAGTCCTGCTACCTCTTAACAAAAACT
GCTGTTTCTAGACCTTTGCTTTTGGTTTTGGATGACAATTTTTATTATCAAAATTCATTG
GGCTTTTGCCAGCTCTTTTTAGATTGTCCTCTTGAGACCTGTTTACAGAGGAATGGCCAG
AGGCCACAGGCACTGCCTGCTGCGACCATCCGCCTGATGGGAAGAAAGCTAGAAAAGCCC
AGCCCTGAGAAAAATGCTTGGGAACACAACAGCCTCACACTGCAGAGTCCAGCGGGTGCT
TCAGGGGCCAGCCTGGAGGTGACTGATTTATTGCTCAGTGCTTTGGAAAATCCAGTAAAA
TATGCTGAGGACAATATGGAACAAAAGGACACAGACAGAATTATTTGTTCAACAAACATT
CTTCATACAGCTGATGTGACACTCCGAAGAATTGTATCTCAGACAATGAAGGAAGCAAAA
GGT
//
KV389661.1:subseq(2195455,100227) GeneWise match 52804 46305 541.07 - . KV389661.1:subseq(2195455,100227)-genewise-prediction-1
KV389661.1:subseq(2195455,100227) GeneWise cds 52804 52589 0.00 - 0 KV389661.1:subseq(2195455,100227)-genewise-prediction-1
KV389661.1:subseq(2195455,100227) GeneWise intron 52588 50228 0.00 - . KV389661.1:subseq(2195455,100227)-genewise-prediction-1
KV389661.1:subseq(2195455,100227) GeneWise cds 50227 49972 0.00 - 0 KV389661.1:subseq(2195455,100227)-genewise-prediction-1
KV389661.1:subseq(2195455,100227) GeneWise intron 49971 49697 0.00 - . KV389661.1:subseq(2195455,100227)-genewise-prediction-1
KV389661.1:subseq(2195455,100227) GeneWise cds 49696 49498 0.00 - 2 KV389661.1:subseq(2195455,100227)-genewise-prediction-1
KV389661.1:subseq(2195455,100227) GeneWise intron 49497 46971 0.00 - . KV389661.1:subseq(2195455,100227)-genewise-prediction-1
KV389661.1:subseq(2195455,100227) GeneWise cds 46970 46895 0.00 - 1 KV389661.1:subseq(2195455,100227)-genewise-prediction-1
KV389661.1:subseq(2195455,100227) GeneWise intron 46894 46401 0.00 - . KV389661.1:subseq(2195455,100227)-genewise-prediction-1
KV389661.1:subseq(2195455,100227) GeneWise cds 46400 46305 0.00 - 0 KV389661.1:subseq(2195455,100227)-genewise-prediction-1
//