genewise output
Score 290.99 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000316_2.0    1 QVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEP 
                     QVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEP 
                     QVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEP 
KV389640.1:subs50000 cgtcggaggagtgtagcctcgccccccgcgccctagcgtctactgccgc 
                     atctttatcgaggtcaaaagctaatagatgcaatattctcgaatgaaac 
                     ggcgggtgccgcccatgccacggggggcgtcccccgtcccccgtcaggt 


SPP00000316_2.0   50 DSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLT           
                     DSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYL            
                     DSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLA           
KV389640.1:subs50147 gaaagagatgccatagttcataaaggagaggccgtatcg           
                     agaaatagtcggcagtctcttgatctcgcgcacctaatc           
                     cccggtgctccccctcaccgtcgtaattctcttccgcgc           


SPP00000316_2.0   89                           -------WNFWKYLVSPDGKVVG 
                                                      WNFWKYLV+PDGKVVG 
                               -:Q[cag]        TSGKEPIWNFWKYLVAPDGKVVG 
KV389640.1:subs50264 CGTGAGTC  Intron 1   TAGAGatgagcatattatcggcggaggg 
                      <1-----[50265:51567]-1>  ccgaactgatgaattccagattg 
                                               ttgggccgccgactacataggag 


SPP00000316_2.0  105 AWDPTVSVEEIRPQITALVRKL                            
                     AWDPTVSVEEIRPQI ALVRKL                            
                     AWDPTVSVEEIRPQIAALVRKL                            
KV389640.1:subs51639 gtgcagtgggaaccaggcgaac                            
                     cgacctctaatgcatccttgat                            
                     tgcacgagggcacgcaatgggc                            


//
Making a Q in phase 1 intron
>KV389640.1:subseq(3351213,100275).pep
QVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFAR
RTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPIWNFWKYLVAPDGKVVGAWDPTVSV
EEIRPQIAALVRKL
//
>KV389640.1:subseq(3351213,100275).[50000:51704].sp
CAGGTGTCCCTGGTGGTGAATGTGGCCAGCGAGTGCGGCTTCACAGATCAGCACTACCGA
GCCCTGCAGCAGCTGCAGCGGGACCTGGGTCCCCACCACTTCAACGTGCTTGCCTTCCCC
TGCAACCAGTTTGGCCAACAGGAGCCTGACAGCAACAAGGAGATTGAGAGCTTTGCCCGC
CGCACCTACAGTGTCTCATTCCCCATGTTTAGCAAGATTGCAGTAACTGGTACCGGTGCC
CATCCTGCCTTCAAGTACCTGGCCCAGACTTCTGGGAAGGAGCCCATCTGGAACTTCTGG
AAATACCTTGTAGCCCCAGATGGAAAGGTGGTAGGGGCTTGGGACCCAACCGTGTCAGTG
GAGGAGATCAGACCCCAGATCGCAGCACTTGTGAGGAAGCTC
//
KV389640.1:subseq(3351213,100275)	GeneWise	match	50000	51704	296.98	+	.	KV389640.1:subseq(3351213,100275)-genewise-prediction-1
KV389640.1:subseq(3351213,100275)	GeneWise	cds	50000	50264	0.00	+	0	KV389640.1:subseq(3351213,100275)-genewise-prediction-1
KV389640.1:subseq(3351213,100275)	GeneWise	intron	50265	51567	0.00	+	.	KV389640.1:subseq(3351213,100275)-genewise-prediction-1
KV389640.1:subseq(3351213,100275)	GeneWise	cds	51568	51704	0.00	+	2	KV389640.1:subseq(3351213,100275)-genewise-prediction-1
//

genewise output
Score 17.28 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000316_2.0   83 AFKYLTW--NFW                                      
                     A+K L+W  NFW                                      
                     AYKVLSWTLNFW                                      
KV389640.1:sub-55764 gtagcatacatt                                      
                     caattggctatg                                      
                     atatccgtatcg                                      


//
>KV389640.1:subseq(3351213,100275).pep
AYKVLSWTLNFW
//
>KV389640.1:subseq(3351213,100275).[55764:55727].sp
GCATATAAAGTTCTCAGCTGGACTCTAAATTTCTGG
//
KV389640.1:subseq(3351213,100275)	GeneWise	match	55764	55729	18.28	-	.	KV389640.1:subseq(3351213,100275)-genewise-prediction-1
KV389640.1:subseq(3351213,100275)	GeneWise	cds	55764	55729	0.00	-	0	KV389640.1:subseq(3351213,100275)-genewise-prediction-1
//