genewise output
Score 219.21 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000028_1.0 21 EAVELRSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLV
+AV L SLWREH C VAGL F C VC WIA DLS L G L+QHGV LV
QAVALWSLWREHVC!VAGLWHFRCGVCHWIAWDLSGLVGFLEQHGV!LV
KV389571.1:subs48088 cgggctactcgcgt2gggctctatggtctagtgcagcggtcgccgg1cg
actctggtggaatg tcgtgatgggtgagtcgatggttgttaaagt tt
gtggggcggggcgt gcgggccgcggccgccgcctccggcgggctg gg
SPP00000028_1.0 70 GVGPEALGLQEFLDGDYFAG LYL
G+GPEALGLQEFL G YFAG LYL
GLGPEALGLQEFLKGSYFAG E:E[gag] LYL
KV389571.1:subs48232 gtgcggcgccgtcagattggGGTGCGTC Intron 1 CAGAGctc
gtgcactgtaattaggatcg <1-----[48293:48727]-1> tat
cggggcgtgggcggccccga ccg
SPP00000028_1.0 94 DESKQLYKELGFK YNSLSILPAA
DESKQLYKELGFK Y+SLSILPAA
DESKQLYKELGFK R:R[cgg] YSSLSILPAA
KV389571.1:subs48739 ggaacctagcgtaCGGTGAGTG Intron 2 CAGGtaacaaccgg
aagaataaatgta <2-----[48780:49358]-2> aggtgttccc
tgcggttgggccg cccgccctgc
SPP00000028_1.0 118 LGKPVRDVAAK AKAVGIQGNLSGDLL
LGKPVRDV+A+ AKA+GIQGNLS DLL
LGKPVRDVSAQ AKAIGIQGNLS!DLL
KV389571.1:subs49390 cgacgcggtgcGTTTGTG Intron 3 CAGgagagacgact2gcc
tgactgatcca<0-----[49423:49510]-0>cactgtagatc att
gggcgctgtcg cgttccggcgt cgg
SPP00000028_1.0 144 QSGGLLVVSK GD-KVLLHFVQKS
QSGGLLVV K GD VLL FVQKS
QSGGLLVVCK G:G[ggt] GDTEVLLPFVQKS
KV389571.1:subs49555 caggccggtaGGTAGGTT Intron 4 CAGGTggaggccctgcat
agggttttga <1-----[49586:49973]-1> gacatttcttaac
gtaggggcca tcaagggtccggt
SPP00000028_1.0 167 PGDYVPKEHILQVLGISAEVCAS
GDYVP+EHILQVLG+SAEVCAS
AGDYVPREHILQVLGMSAEVCAS
KV389571.1:subs50015 gggtgccgcatcgcgatgggtga
cgaatcgaattattgtccatgcg
accttcggtcggcgcgtaggtct
//
Making a E in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>KV389571.1:subseq(4650514,100083).pep
QAVALWSLWREHVCXVAGLWHFRCGVCHWIAWDLSGLVGFLEQHGVXLVGLGPEALGLQE
FLKGSYFAGELYLDESKQLYKELGFKRYSSLSILPAALGKPVRDVSAQAKAIGIQGNLSX
DLLQSGGLLVVCKGGDTEVLLPFVQKSAGDYVPREHILQVLGMSAEVCAS
//
>KV389571.1:subseq(4650514,100083).[48088:48129].sp
CAGGCTGTGGCGCTGTGGAGCCTGTGGCGGGAGCACGTGTGT
>KV389571.1:subseq(4650514,100083).[48132:48224].sp
GTGGCCGGGCTGTGGCACTTCAGGTGCGGGGTGTGCCACTGGATCGCCTGGGACCTCAGT
GGCCTCGTGGGGTTCCTGGAGCAGCACGGTGTG
>KV389571.1:subseq(4650514,100083).[48226:49543].sp
CTGGTGGGCTTGGGGCCGGAGGCCCTGGGTCTGCAGGAGTTCCTGAAGGGCAGCTACTTC
GCGGGAGAGCTCTACCTGGATGAGAGCAAGCAGCTTTATAAGGAGCTGGGCTTCAAGCGG
TACAGCAGCCTGAGCATCCTCCCTGCGGCCCTGGGGAAGCCCGTGCGCGATGTGTCTGCC
CAGGCCAAGGCTATTGGCATCCAGGGGAACCTGTCT
>KV389571.1:subseq(4650514,100083).[49546:50083].sp
GACCTGCTGCAGAGTGGAGGGCTGCTGGTGGTCTGCAAAGGTGGTGACACAGAAGTGCTG
CTGCCTTTCGTCCAGAAGTCTGCAGGCGACTATGTTCCCCGGGAGCATATCTTGCAGGTC
CTGGGCATGTCTGCAGAGGTGTGTGCCAGT
//
KV389571.1:subseq(4650514,100083) GeneWise match 48088 48129 9.46 + . KV389571.1:subseq(4650514,100083)-genewise-prediction-1
KV389571.1:subseq(4650514,100083) GeneWise cds 48088 48129 0.00 + 0 KV389571.1:subseq(4650514,100083)-genewise-prediction-1
KV389571.1:subseq(4650514,100083) GeneWise match 48132 48224 33.01 + . KV389571.1:subseq(4650514,100083)-genewise-prediction-2
KV389571.1:subseq(4650514,100083) GeneWise cds 48132 48224 0.00 + 0 KV389571.1:subseq(4650514,100083)-genewise-prediction-2
KV389571.1:subseq(4650514,100083) GeneWise match 48226 49543 95.19 + . KV389571.1:subseq(4650514,100083)-genewise-prediction-3
KV389571.1:subseq(4650514,100083) GeneWise cds 48226 48292 0.00 + 0 KV389571.1:subseq(4650514,100083)-genewise-prediction-3
KV389571.1:subseq(4650514,100083) GeneWise intron 48293 48727 0.00 + . KV389571.1:subseq(4650514,100083)-genewise-prediction-3
KV389571.1:subseq(4650514,100083) GeneWise cds 48728 48779 0.00 + 2 KV389571.1:subseq(4650514,100083)-genewise-prediction-3
KV389571.1:subseq(4650514,100083) GeneWise intron 48780 49358 0.00 + . KV389571.1:subseq(4650514,100083)-genewise-prediction-3
KV389571.1:subseq(4650514,100083) GeneWise cds 49359 49422 0.00 + 1 KV389571.1:subseq(4650514,100083)-genewise-prediction-3
KV389571.1:subseq(4650514,100083) GeneWise intron 49423 49510 0.00 + . KV389571.1:subseq(4650514,100083)-genewise-prediction-3
KV389571.1:subseq(4650514,100083) GeneWise cds 49511 49543 0.00 + 0 KV389571.1:subseq(4650514,100083)-genewise-prediction-3
KV389571.1:subseq(4650514,100083) GeneWise match 49546 50083 81.54 + . KV389571.1:subseq(4650514,100083)-genewise-prediction-4
KV389571.1:subseq(4650514,100083) GeneWise cds 49546 49585 0.00 + 0 KV389571.1:subseq(4650514,100083)-genewise-prediction-4
KV389571.1:subseq(4650514,100083) GeneWise intron 49586 49973 0.00 + . KV389571.1:subseq(4650514,100083)-genewise-prediction-4
KV389571.1:subseq(4650514,100083) GeneWise cds 49974 50083 0.00 + 2 KV389571.1:subseq(4650514,100083)-genewise-prediction-4
//
genewise output
Score 19.13 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000028_1.0 32 HACVVAGLRRFGCVVCRW
HACV + CV C W
HACVYVRVVTCVCVYCLW
KV389571.1:sub-67916 cgtgtgcggatgtgttct
acgtatgttcgtgtagtg
tatgcgttagtatgtcag
//
>KV389571.1:subseq(4650514,100083).pep
HACVYVRVVTCVCVYCLW
//
>KV389571.1:subseq(4650514,100083).[67916:67861].sp
CATGCATGTGTGTACGTGCGTGTTGTAACGTGTGTATGTGTGTATTGCCTATGG
//
KV389571.1:subseq(4650514,100083) GeneWise match 67916 67863 19.13 - . KV389571.1:subseq(4650514,100083)-genewise-prediction-1
KV389571.1:subseq(4650514,100083) GeneWise cds 67916 67863 0.00 - 0 KV389571.1:subseq(4650514,100083)-genewise-prediction-1
//