genewise output
Score 21.74 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000365_2.0   10 PVSTKNTKN                                         
                     PVSTKNTKN                                         
                     PVSTKNTKN                                         
KV389518.1:subs94512 cgtaaaaaa                                         
                     ctccaacaa                                         
                     tcttataat                                         


//
>KV389518.1:subseq(12414892,100149).pep
PVSTKNTKN
//
>KV389518.1:subseq(12414892,100149).[94512:94538].sp
CCTGTCTCTACTAAAAATACAAAAAAT
//
KV389518.1:subseq(12414892,100149)	GeneWise	match	94512	94538	21.74	+	.	KV389518.1:subseq(12414892,100149)-genewise-prediction-1
KV389518.1:subseq(12414892,100149)	GeneWise	cds	94512	94538	0.00	+	0	KV389518.1:subseq(12414892,100149)-genewise-prediction-1
//

genewise output
Score 285.26 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000365_2.0    1 ETRLAYMVKPVSTKNTKNTKNKKPGK                        
                     ET LA MVKPVSTKNT   KNKKPGK                        
                     ETSLANMVKPVSTKNT---KNKKPGK                        
KV389518.1:sub-99992 gaacgaagacgtaaaa   aaaacgaGTGGCAC  Intron 1   AAG 
                     acgtcattactccaac   aaaacga<0-----[99923:61265]-0> 
                     accgccggaccttata   atagacg                        


SPP00000365_2.0   27 SEWQKKLTPEQSYVTREKGTEP                       PFSG 
                     SEWQKKLTPEQ YVTREKGTEP                       PFSG 
                     SEWQKKLTPEQFYVTREKGTEP                       PFSG 
KV389518.1:sub-61264 agtcaacacgcttgaagagagcGTAAGCG  Intron 2   CAGctag 
                     gagaaatccaatatcgaagcac<0-----[61198:58399]-0>ctgg 
                     tggagaacagaccccaagagag                       tctg 


SPP00000365_2.0   53 IYLNNKEAGMYHCVCCDSPLF                          SE 
                     IYLNNKEAGMYHCVCCD+PLF                          SE 
                     IYLNNKEAGMYHCVCCDNPLF           S:S[agt]       SE 
KV389518.1:sub-58386 atcaaagggatctgttgacctAGGTAAGAT  Intron 3   CAGTtg 
                     tataaaacgtaagtggaactt  <2-----[58321:50148]-2> ca 
                     ccgtcgaaagcccgccttacc                          tg 


SPP00000365_2.0   77 KKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQ   
                     KKYCSGTGWPSFSEAHGTSGSDESH GILRRLDTSLGSARTEVVCKQ   
                     KKYCSGTGWPSFSEAHGTSGSDESHAGILRRLDTSLGSARTEVVCKQ   
KV389518.1:sub-50140 aatttgagtctttggcgatgtggacggacaccgattgtgcagggtac   
                     aaagcgcggcctcacagccgcaagacgttggtacctgccgcattgaa   
                     agcctccggtgttgtttgtcttaccagcgatgccgaactcagcccgg   


SPP00000365_2.0  124                        CEAHLGHVFPDGPGPNGQRFCINSVA 
                                            CEAHLGHVFPDGPGPNGQRFCINS+A 
                                            CEAHLGHVFPDGPGPNGQRFCINSLA 
KV389518.1:sub-49999 GTGAGAT  Intron 4   CAGtggccgcgtcggcgcagcattaaacg 
                     <0-----[49999:48722]-0>gacatgattcagcgcagagtgtagtc 
                                            tattttcgtttatgcctggtccctgt 


SPP00000365_2.0  150 LKFKPR                                            
                     LKFKPR                                            
                     LKFKPR                                            
KV389518.1:sub-48643 cataca                                            
                     tatacg                                            
                     ggcacg                                            


//
Making a S in phase 2 intron
>KV389518.1:subseq(12414892,100149).pep
ETSLANMVKPVSTKNTKNKKPGKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMY
HCVCCDNPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHAGILRRLDTSLGSARTEVVCKQ
CEAHLGHVFPDGPGPNGQRFCINSLALKFKPR
//
>KV389518.1:subseq(12414892,100149).[99992:48624].sp
GAAACCAGCCTGGCCAACATGGTGAAACCCGTCTCTACTAAAAATACAAAAAATAAAAAG
CCAGGCAAGAGTGAGTGGCAAAAGAAACTAACCCCAGAGCAATTCTACGTCACCAGAGAA
AAGGGAACGGAACCGCCTTTCAGTGGGATCTACCTGAATAACAAGGAAGCAGGAATGTAC
CACTGCGTGTGCTGCGATAATCCACTCTTCAGTTCTGAGAAAAAGTACTGCTCTGGCACC
GGGTGGCCTTCGTTTTCTGAGGCTCATGGTACGTCTGGCTCTGATGAAAGCCACGCAGGG
ATCCTGAGACGTCTGGACACCTCGTTAGGATCCGCTCGCACAGAGGTCGTCTGCAAGCAG
TGTGAAGCTCATCTTGGTCACGTGTTTCCTGATGGACCTGGGCCCAACGGTCAGAGGTTT
TGCATCAACAGTCTGGCTCTGAAGTTCAAACCCAGG
//
KV389518.1:subseq(12414892,100149)	GeneWise	match	99992	48626	287.26	-	.	KV389518.1:subseq(12414892,100149)-genewise-prediction-1
KV389518.1:subseq(12414892,100149)	GeneWise	cds	99992	99924	0.00	-	0	KV389518.1:subseq(12414892,100149)-genewise-prediction-1
KV389518.1:subseq(12414892,100149)	GeneWise	intron	99923	61265	0.00	-	.	KV389518.1:subseq(12414892,100149)-genewise-prediction-1
KV389518.1:subseq(12414892,100149)	GeneWise	cds	61264	61199	0.00	-	0	KV389518.1:subseq(12414892,100149)-genewise-prediction-1
KV389518.1:subseq(12414892,100149)	GeneWise	intron	61198	58399	0.00	-	.	KV389518.1:subseq(12414892,100149)-genewise-prediction-1
KV389518.1:subseq(12414892,100149)	GeneWise	cds	58398	58322	0.00	-	0	KV389518.1:subseq(12414892,100149)-genewise-prediction-1
KV389518.1:subseq(12414892,100149)	GeneWise	intron	58321	50148	0.00	-	.	KV389518.1:subseq(12414892,100149)-genewise-prediction-1
KV389518.1:subseq(12414892,100149)	GeneWise	cds	50147	50000	0.00	-	1	KV389518.1:subseq(12414892,100149)-genewise-prediction-1
KV389518.1:subseq(12414892,100149)	GeneWise	intron	49999	48722	0.00	-	.	KV389518.1:subseq(12414892,100149)-genewise-prediction-1
KV389518.1:subseq(12414892,100149)	GeneWise	cds	48721	48626	0.00	-	0	KV389518.1:subseq(12414892,100149)-genewise-prediction-1
//