genewise output
Score 19.11 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000363_2.0 255 QGHPENXYMPGS
QG +N+Y+PGS
QGKHQNTYLPGS
KV389506.1:subs95670 cgaccaatccga
agaaaacatcgg
acgtgccttttt
//
>KV389506.1:subseq(2207742,100551).pep
QGKHQNTYLPGS
//
>KV389506.1:subseq(2207742,100551).[95670:95705].sp
CAAGGCAAGCATCAGAACACCTATCTTCCTGGTAGT
//
KV389506.1:subseq(2207742,100551) GeneWise match 95670 95705 19.11 + . KV389506.1:subseq(2207742,100551)-genewise-prediction-1
KV389506.1:subseq(2207742,100551) GeneWise cds 95670 95705 0.00 + 0 KV389506.1:subseq(2207742,100551)-genewise-prediction-1
//
genewise output
Score 602.27 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000363_2.0 1 MWRSLGLALALCLLPSGGTESQDQSSSCKHPPAWSIRDQDPMLNSSGSV
MWRSLGLALALCLLPSGGTESQDQSS CK PPAWSIRDQDPMLNS+GSV
MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSTGSV
KV389506.1:sub-56210 ataacgcgcgctccctggagacgcatttacccgtaaagcgcacatagtg
tgggtgtctctgttccggcagaaagctgaacccggtgaaacttaccgct
ggacggtcgtctcccaaaagcgcaccatgacacgcaatataggccttag
SPP00000363_2.0 50 TVVALLQASXYLCILQAS LEDLR
TVVALLQASXYLCILQAS LEDLR
TVVALLQASXYLCILQAS R:R[aga] LEDLR
KV389506.1:sub-56063 agggcccgattctaccgtAGGTAAGAC Intron 1 TAGAtggcc
cttcttacggatgttacc <2-----[56007:54945]-2> taatg
tgttttactacgctggat gacga
SPP00000363_2.0 74 VKLEKEGYSNISYIIVNHQGLSSQLRYTHLKNQVSEHIPVYQQEENQPD
VKLEKEGYSNISYIIVNHQGLSSQLRYTHLKNQVSEHIPVYQQEENQPD
VKLEKEGYSNISYIIVNHQGLSSQLRYTHLKNQVSEHIPVYQQEENQPD
KV389506.1:sub-54928 gacgaggttaattaagaccgcttctataccaacgtgcacgtccggaccg
tataaagacatcatttaaagtccatgacataaatcaatctaaaaaaaca
aaggaaatttttttttttaacttaaacattgtgtagtttttgaaacaat
SPP00000363_2.0 123 VWTLLNGNKDDFLIYD CGRLVYH
VW LLNGNKDDFLIYD CGRLVYH
VWALLNGNKDDFLIYD R:R[aga] CGRLVYH
KV389506.1:sub-54781 gtgctagaaggtcatgAGGTTTGTA Intron 2 TAGAtgccgtc
tgcttagaaaatttaa <2-----[54731:52607]-2> gggttaa
cgttatacatcccatc tcttatt
SPP00000363_2.0 147 LGLPFSFLTFPYVEEAIKIAYCEKKCGNCPLT
LGLPFSFLTFPYVEEAIKIAYCEKKCGNC LT
LGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLT
KV389506.1:sub-52584 cgtctttcatctggggaaagttgaatgattca
tgtctcttctcataactatcagaaaggagctc
ttgttccaacataaactgttctagatacctcg
SPP00000363_2.0 179 TLNDEDFCKNVSLATVNKTTEAPQPH
TL DEDFCKNVSLATVNKTTEAPQPH
TLKDEDFCKNVSLATVNKTTEAPQPH
KV389506.1:sub-52488 GTATTTT Intron 3 CAGacagggttaagttgagaaaaggcccc
<0-----[52488:50552]-0>ctaaaatgaatctcctaaccaccaca
tcatacttatatgttgtaatatagct
SPP00000363_2.0 205 HHHKHHHNHRHQHLGSSELSKNQQPGAPDAPTHLTPLDLYHHHKHKGQH
HHHKHH NH HQHLGSSELSKNQQPGAPDAPTHLTP DL+HHHKHKGQH
HHHKHHRNHGHQHLGSSELSKNQQPGAPDAPTHLTPSDLHHHHKHKGQH
KV389506.1:sub-50473 cccacccacgccccgaagctaacccggcggcaccactgcccccacagcc
aaaaaagaagaaatgggatcaaaacgccacccatcccataaaaaaagaa
cttgttcttatgctcctgtagtgaaaaatttttcttatttcctgcgtat
SPP00000363_2.0 254 RQGHPENXYMPGSEGLQHPRNKLXQRRCINQLLXKLPKDSELAPRSXCX
RQGHPENXY+PGSEGLQHPRNKLXQ+RCINQLLXKLPKDSELAPRS
RQGHPENXYIPGSEGLQHPRNKLXQKRCINQLLXKLPKDSELAPRS!A!
KV389506.1:sub-50326 acgccgattacgaggtccccaactcaataactctatcagtgtgcaa4g2
gagacaagatcggagtaacgaatgaaggtaattgatcaacatccgg c
ggtcagcataaatataataacgcaagatataacaagcataggttgc t
SPP00000363_2.0 303 HCRHLIFEKTGSAITXQCKENLPSLCSXQGLRAEENITESCQXRLPPAA
HCRHLIFEKTGSAITXQC ENLPSLCSXQGLRAEENITESCQXRLPPAA
HCRHLIFEKTGSAITXQCTENLPSLCSXQGLRAEENITESCQXRLPPAA
KV389506.1:sub-50179 ctcccatgaagtgaatctagacctttatcgccgggaaagttctctccgg
aggatttaacgcctcgagcaatcctgggagtgcaaatcacgaggtcccc
ttatgataaggtaccagtaactatatcagatgaggtatattgatgtatc
SPP00000363_2.0 352 XQTSQQLIPTEASTN
X+TSQQLIPTEASTN
XKTSQQLIPTEASTN
KV389506.1:sub-50032 taaacccacaggaaa
gacgaattccacgca
agatggtataactct
//
Making a R in phase 2 intron
Making a R in phase 2 intron
>KV389506.1:subseq(2207742,100551).pep
MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSTGSVTVVALLQASXY
LCILQASRLEDLRVKLEKEGYSNISYIIVNHQGLSSQLRYTHLKNQVSEHIPVYQQEENQ
PDVWALLNGNKDDFLIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL
KDEDFCKNVSLATVNKTTEAPQPHHHHKHHRNHGHQHLGSSELSKNQQPGAPDAPTHLTP
SDLHHHHKHKGQHRQGHPENXYIPGSEGLQHPRNKLXQKRCINQLLXKLPKDSELAPRSX
AXHCRHLIFEKTGSAITXQCTENLPSLCSXQGLRAEENITESCQXRLPPAAXKTSQQLIP
TEASTN
//
>KV389506.1:subseq(2207742,100551).[56210:50187].sp
ATGTGGAGAAGCCTGGGGCTTGCCCTGGCTCTCTGTCTCCTCCCCTCAGGAGGAACAGAG
AGCCAGGACCAAAGCTCCTTATGTAAGCAACCCCCAGCCTGGAGCATAAGAGATCAAGAT
CCAATGCTGAACTCCACTGGTTCAGTGACTGTGGTTGCTCTTCTTCAAGCCAGTTGATAC
CTGTGCATTCTGCAGGCATCTAGATTGGAAGACCTGCGAGTAAAACTGGAGAAAGAAGGA
TATTCTAATATTTCTTATATTATTGTTAATCATCAAGGACTCTCTTCTCAATTAAGATAC
ACACATCTTAAGAATCAGGTTTCAGAGCATATTCCTGTTTATCAGCAAGAAGAAAACCAA
CCAGATGTCTGGGCTCTTTTAAATGGAAACAAAGATGACTTCCTCATATATGACAGATGT
GGCCGTCTTGTATATCATCTTGGTTTGCCTTTTTCCTTCCTAACATTCCCATATGTAGAA
GAAGCCATTAAGATTGCTTACTGTGAAAAGAAATGTGGAAACTGCTCTCTCACGACTCTC
AAAGATGAAGACTTTTGTAAAAATGTATCTTTGGCTACTGTGAATAAAACAACTGAAGCT
CCACAGCCCCATCACCATCATAAGCATCATCGCAATCATGGACATCAGCACCTTGGCAGC
AGTGAGCTTTCAAAGAATCAGCAACCAGGAGCACCAGATGCTCCTACTCATCTCACTCCT
TCAGATCTTCATCACCACCATAAGCACAAGGGTCAACATAGGCAGGGTCACCCAGAGAAC
TGATATATACCAGGAAGTGAAGGTTTACAACATCCACGAAACAAGCTCTGACAAAAGAGA
TGTATAAATCAATTACTCTGAAAATTGCCCAAAGATTCAGAGTTGGCTCCTAGGAGC
>KV389506.1:subseq(2207742,100551).[50184:50180].sp
GCT
>KV389506.1:subseq(2207742,100551).[50179:49986].sp
CATTGTCGACATCTGATATTTGAAAAAACGGGGTCTGCAATCACCTGACAGTGTACAGAA
AACCTTCCATCTTTATGTAGCTGACAGGGACTTCGGGCAGAGGAGAATATAACTGAATCT
TGTCAGTGACGTTTGCCTCCAGCTGCCTGAAAGACAAGTCAGCAGCTTATACCTACAGAA
GCCAGTACCAAT
//
KV389506.1:subseq(2207742,100551) GeneWise match 56210 50189 561.69 - . KV389506.1:subseq(2207742,100551)-genewise-prediction-1
KV389506.1:subseq(2207742,100551) GeneWise cds 56210 56008 0.00 - 0 KV389506.1:subseq(2207742,100551)-genewise-prediction-1
KV389506.1:subseq(2207742,100551) GeneWise intron 56007 54945 0.00 - . KV389506.1:subseq(2207742,100551)-genewise-prediction-1
KV389506.1:subseq(2207742,100551) GeneWise cds 54944 54732 0.00 - 1 KV389506.1:subseq(2207742,100551)-genewise-prediction-1
KV389506.1:subseq(2207742,100551) GeneWise intron 54731 52607 0.00 - . KV389506.1:subseq(2207742,100551)-genewise-prediction-1
KV389506.1:subseq(2207742,100551) GeneWise cds 52606 52489 0.00 - 1 KV389506.1:subseq(2207742,100551)-genewise-prediction-1
KV389506.1:subseq(2207742,100551) GeneWise intron 52488 50552 0.00 - . KV389506.1:subseq(2207742,100551)-genewise-prediction-1
KV389506.1:subseq(2207742,100551) GeneWise cds 50551 50189 0.00 - 0 KV389506.1:subseq(2207742,100551)-genewise-prediction-1
KV389506.1:subseq(2207742,100551) GeneWise match 50184 50182 -17.05 - . KV389506.1:subseq(2207742,100551)-genewise-prediction-2
KV389506.1:subseq(2207742,100551) GeneWise cds 50184 50182 0.00 - 0 KV389506.1:subseq(2207742,100551)-genewise-prediction-2
KV389506.1:subseq(2207742,100551) GeneWise match 50179 49988 57.63 - . KV389506.1:subseq(2207742,100551)-genewise-prediction-3
KV389506.1:subseq(2207742,100551) GeneWise cds 50179 49988 0.00 - 0 KV389506.1:subseq(2207742,100551)-genewise-prediction-3
//