genewise output
Score 375.01 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000368_2.0 1 LLLVAASAVVRSEASANLGGVPSKRLKMQYATGPLLKFQI
LLLVAASAVVRSEASANLGG+PSKRLKMQYATGPLLKFQI
LLLVAASAVVRSEASANLGGMPSKRLKMQYATGPLLKFQI
KV389451.1:subs36013 cccgggtgggcaggtgacggacaaataactgagcccatca
ttttccccttggacccatggtcgagtataaccgcttatat
tcgggggggcgcgcgccgccgccgaagggccggggcgcgt
SPP00000368_2.0 41 VSXGYRRVFEEYMRVISQRYPDI
VSXGYRRVFEEYMRVISQRYPDI
C:C[tgt] VSXGYRRVFEEYMRVISQRYPDI
KV389451.1:subs36133 TGGTGAGTA Intron 1 CAGTgttgtacgtggtacgaacctcga
<2-----[36135:49346]-2> tcggaggttaaatgttgagacat
tcagtggatggcggttcggcacc
SPP00000368_2.0 65 RIEGENYLPQPIY HIASFLSVFK
RIEGENYLPQPIY HIASFLSVFK
RIEGENYLPQPIY R:R[aga] HIASFLSVFK
KV389451.1:subs49417 cagggatccccatAGGTAAGAA Intron 2 TAGAcagttctgta
gtagaaatcacta <2-----[49458:50001]-2> atccttctta
ccaagtcctaaat caatcgacca
SPP00000368_2.0 89 LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK
LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK
LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK
KV389451.1:subs50033 cgtagtaaggagctgttgacgcaatctgcgaa
ttttgttttgaactcttgtaccgtgaggaaaa
aaaacaattcgttttttcgattccgggcaatg
SPP00000368_2.0 121 VYACMMVFFLSNMIENQCMSTGAFEI
VYACMMVFFLSNMIENQCMSTGAFEI
VYACMMVFFLSNMIENQCMSTGAFEI
KV389451.1:subs50129 GTACGTA Intron 3 TAGgtgtaagtttaaaagactataggtga
<0-----[50129:52035]-0>tacgttttttgattaaagtccgctat
ctatggtccgccgtgcgtgaatatga
SPP00000368_2.0 147 TLN VPVWSKLESGHLPSMQQLVQ
TLN VPVWSKLESGHLPSMQQLVQ
TLN D:D[gat] VPVWSKLESGHLPSMQQLVQ
KV389451.1:subs52114 ataGGTAGGTT Intron 4 TAGATgcgttacgtgccctacccgc
cta <1-----[52124:53891]-1> tctgcatacgatcctaatta
tat atagtggattctacgaatta
SPP00000368_2.0 171 ILDNEMKLNVHMDSIPHHRS
ILDNEMKLNVHMDSIPHHRS
ILDNEMKLNVHMDSIPHHRS
KV389451.1:subs53954 acgagaacagcagtacccct
ttaaatatatatactcaagc
ttctaggctgtgtacactaa
//
Making a C in phase 2 intron
Making a R in phase 2 intron
Making a D in phase 1 intron
>KV389451.1:subseq(773759,100131).pep
LLLVAASAVVRSEASANLGGMPSKRLKMQYATGPLLKFQICVSXGYRRVFEEYMRVISQR
YPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK
VYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNV
HMDSIPHHRS
//
>KV389451.1:subseq(773759,100131).[36013:54013].sp
CTTCTCCTGGTGGCGGCGTCGGCGGTGGTCCGGAGCGAGGCCTCGGCCAACCTGGGCGGC
ATGCCCAGCAAGAGATTAAAGATGCAGTACGCCACGGGGCCGCTGCTCAAGTTCCAGATT
TGTGTTTCCTGAGGGTATAGGCGGGTATTTGAGGAGTACATGCGGGTTATTAGCCAGCGG
TACCCAGACATCCGCATCGAAGGAGAGAATTACCTCCCTCAACCAATATATAGACACATA
GCATCTTTCCTGTCAGTCTTCAAACTAGTATTAATAGGCTTAATAATTGTTGGCAAGGAT
CCTTTTGCTTTTTTTGGCATGCAAGCTCCTAGCATCTGGCAGTGGGGCCAAGAAAATAAG
GTCTATGCATGTATGATGGTTTTCTTCTTGAGCAACATGATTGAGAACCAGTGTATGTCA
ACAGGTGCATTTGAGATAACTTTAAATGATGTACCTGTATGGTCTAAGCTGGAATCTGGT
CACCTTCCATCCATGCAACAACTTGTTCAAATTCTTGACAATGAAATGAAGCTCAATGTG
CATATGGATTCAATCCCACACCATCGATCA
//
KV389451.1:subseq(773759,100131) GeneWise match 36013 54013 375.01 + . KV389451.1:subseq(773759,100131)-genewise-prediction-1
KV389451.1:subseq(773759,100131) GeneWise cds 36013 36134 0.00 + 0 KV389451.1:subseq(773759,100131)-genewise-prediction-1
KV389451.1:subseq(773759,100131) GeneWise intron 36135 49346 0.00 + . KV389451.1:subseq(773759,100131)-genewise-prediction-1
KV389451.1:subseq(773759,100131) GeneWise cds 49347 49457 0.00 + 1 KV389451.1:subseq(773759,100131)-genewise-prediction-1
KV389451.1:subseq(773759,100131) GeneWise intron 49458 50001 0.00 + . KV389451.1:subseq(773759,100131)-genewise-prediction-1
KV389451.1:subseq(773759,100131) GeneWise cds 50002 50128 0.00 + 1 KV389451.1:subseq(773759,100131)-genewise-prediction-1
KV389451.1:subseq(773759,100131) GeneWise intron 50129 52035 0.00 + . KV389451.1:subseq(773759,100131)-genewise-prediction-1
KV389451.1:subseq(773759,100131) GeneWise cds 52036 52123 0.00 + 0 KV389451.1:subseq(773759,100131)-genewise-prediction-1
KV389451.1:subseq(773759,100131) GeneWise intron 52124 53891 0.00 + . KV389451.1:subseq(773759,100131)-genewise-prediction-1
KV389451.1:subseq(773759,100131) GeneWise cds 53892 54013 0.00 + 2 KV389451.1:subseq(773759,100131)-genewise-prediction-1
//
genewise output
Score 20.18 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000368_2.0 93 GLIIVGKDPFAFFGMQAPSIWQWG
G +++ +P+ +F Q PS +WG
GKLVINGNPITIFQEQDPSKIKWG
KV389451.1:sub-98235 gacgaagacaaatcgcgctaaatg
gatttagactcttaaaaccatagg
ggtcctatcccacggatccacggc
//
>KV389451.1:subseq(773759,100131).pep
GKLVINGNPITIFQEQDPSKIKWG
//
>KV389451.1:subseq(773759,100131).[98235:98162].sp
GGGAAGCTTGTCATCAATGGAAATCCCATCACCATATTCCAGGAGCAAGATCCCTCCAAA
ATCAAGTGGGGC
//
KV389451.1:subseq(773759,100131) GeneWise match 98235 98164 20.18 - . KV389451.1:subseq(773759,100131)-genewise-prediction-1
KV389451.1:subseq(773759,100131) GeneWise cds 98235 98164 0.00 - 0 KV389451.1:subseq(773759,100131)-genewise-prediction-1
//