genewise output
Score 1076.27 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000376_2.0 101 TEDVRALEGALLELAAETDLPIVFVKQRKIGGHGPTLK
TED RALEGAL ELAAETDLP+VFVKQRKIGG GPTLK
TEDGRALEGALSELAAETDLPVVFVKQRKIGGRGPTLK
KV389434.1:subs14406 agggcgcgggctgtgggagccggtgacaaaggcgcata
caaggctagctcatccacatcttttaagatggggccta
agctgcgaagcgagcgaccgatgtgagagaccttacgg
SPP00000376_2.0 139 AHQEGRLQKLLKMNGPEDLPESCDYD
A+QEGRLQKLLKMNGPE LPES YD
AYQEGRLQKLLKMNGPEGLPES--YD
KV389434.1:subs14520 GTAGGAG Intron 1 TAGgtcggaccaccaaagcggccgt tg
<0-----[14520:37699]-0>caaaggtaattatagcagtcac aa
ttggcatagaaagcctgttcgc tc
SPP00000376_2.0 165 YDLIIIGGGSGGLAAAKARLL EAAQY
YDLIIIGGGSGGLAAAKARLL EAAQY
YDLIIIGGGSGGLAAAKARLL EAAQY
KV389434.1:subs37772 tgcaaagggtggcgggagaccGTGTTAT Intron 2 CAGgggct
aattttgggcggtcccacgtt<0-----[37835:40524]-0>accaa
tctcctatctacaattgagct aacat
SPP00000376_2.0 191 GKKVMVLDFVTPTPLGTRW LGGT
GKKVMVLDFVTPTPLGTRW LGGT
GKKVMVLDFVTPTPLGTRW G:G[ggt] LGGT
KV389434.1:subs40540 gaagagcgtgacaccgaatGGTGAGCT Intron 3 TAGGTcgga
gaattttattcccctgcgg <1-----[40598:42924]-1> tggc
cggggcgctctccttatag caaa
SPP00000376_2.0 215 CVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEET
CVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEET
CVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEET
KV389434.1:subs42939 tgaggtacaacaccggttgcgccgtcatgtaggga
gtatggtcaattaaccttgactaacgaaggataac
tgtgtcataaggcattgaaacaactactagacgga
SPP00000376_2.0 250 KHDWDRMIEAVQNHIGSLNWGYR
KHDWDRMIEAVQNHIGSLNWGYR
V:V[gtt] KHDWDRMIEAVQNHIGSLNWGYR
KV389434.1:subs43044 GGTACAGG Intron 4 CAGTTacgtgaaagggcacagttatgtc
<1-----[43045:46794]-1> aaagagttactaaatgctaggag
gttgcagaatagtctctgcgccg
SPP00000376_2.0 274 VALREKKVVYENAYGQFIGPHRIK AT
VALREKKVVYENAYGQFIGPHRIK AT
VALREKKVVYENAYGQFIGPHRIK AT
KV389434.1:subs46866 ggccgaaggtgagtgctagccaaaGTAATTG Intron 5 TAGga
tctgaaattaaacagattgcagta<0-----[46938:47424]-0>cc
atggggatctgtttgattttcgtg aa
SPP00000376_2.0 300 NNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS
NNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS
NNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS
KV389434.1:subs47431 aaagagaattggatcagaggaccttgacggagttaa
aaagaaataccagtttccgagcgatgtcgaaaagtg
ttacaagttaagatctcttaaatcgccttcaacccc
SPP00000376_2.0 336 DDLFSLPYCPGKTLIVGASYVAL
DDLFSLPYCPGKTLIVGASYVAL
S:S[agt] DDLFSLPYCPGKTLIVGASYVAL
KV389434.1:subs47539 AGGTAAGGA Intron 6 AAGTggctttcttcgaacagggttggt
<2-----[47541:50004]-2> aattctcagcgactttgccatct
tttccatccgggccctaactttg
SPP00000376_2.0 360 ECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFV
ECAGFLAGIGLDVTVMVRSILLRGFDQ+MANKIGEHMEEHGIKFIRQFV
ECAGFLAGIGLDVTVMVRSILLRGFDQEMANKIGEHMEEHGIKFIRQFV
KV389434.1:subs50075 gtggtcggagtggagagataccagtgcgagaaaggcaggcgaataactg
agcgttcgtgtatctttgctttggtaaatcaatgaataaagtattgatt
attattttttatcttgtgctttaatcgagccattacgaatccgtaagca
SPP00000376_2.0 409 PIK VEQIEAGTPGRLRVVAQSTNNEE
PIK VEQIEAGTPGRLRVVAQSTN+EE
PIK VEQIEAGTPGRLRVVAQSTNSEE
KV389434.1:subs50222 caaGTAAGTG Intron 7 CAGggcagggacgcccgggctaaagg
cta<0-----[50231:53293]-0>taatacgccggtgttcaccagaa
ata caataagaacacaaatgtcttga
SPP00000376_2.0 435 IIEGEYNT VLLAIGRDACTRKIGLET
IIEGEYNT VLLAIGRDACTRKIGLET
IIEGEYNT VLLAIGRDACTRKIGLET
KV389434.1:subs53363 aagggtaaGTAAGGA Intron 8 CAGgttgagaggtaaaagtga
ttagaaac<0-----[53387:54571]-0>tttctggacgcgatgtac
ctaagttg gggaacattcaaatcaat
SPP00000376_2.0 461 VGVKINE TGKIPVTDEEQTNVPY
VGVKINE TGKIPVTDEEQTNVPY
VGVKINE K:K[aag] TGKIPVTDEEQTNVPY
KV389434.1:subs54626 gggaaagAAGTAAGAA Intron 9 CAGGagaacgagggcaagct
tgtataa <2-----[54649:55314]-2> cgatctcaaaacatca
agggata taaatcataggccgtc
SPP00000376_2.0 485 IYAIGDILEGKVELTPVAIQAGRLLAQRLYAGSTVK
IYAIGDILEGKVELTPVAIQAGRLLAQRLYAGSTVK
IYAIGDILEGKVELTPVAIQAGRLLAQRLYAGSTVK
KV389434.1:subs55364 atgaggatggaggcacggacggatcgcactggtaga
tactgattagatatcctctacggttcagtacgccta
ctctctaggtgggtcatacgaaaggtggctatcttg
SPP00000376_2.0 521 CDYENVPTTVFTPLEYGACGLSEEKA
CDYENVPTTVFTPLEYGACGLSEEKA
CDYENVPTTVFTPLEYGACGLSEEKA
KV389434.1:subs55472 GTGAGTG Intron 10 CAGtgtgagcaagtactgtggtgctggag
<0-----[55472:55997]-0>gaaaatcccttcctaagcggtcaaac
tctattgctatttgatattcttggat
SPP00000376_2.0 547 VEKFGEENIE VYHSYFWPLEWTIPSR
VEKFGEENIE VYHSYFWPLEWTIPSR
VEKFGEENIE VYHSYFWPLEWTIPSR
KV389434.1:subs56076 ggatgggaagGTAATTT Intron 11 TAGgtcatttctgtaacta
taatgaaata<0-----[56106:58263]-0>taagatgctagctccg
gggtgaattg tcttctgagaggtaaa
SPP00000376_2.0 573 DNNKCYAKIICNTKDS ERVVGFHVLG
DNNKCYAKIICN KD+ ERVVGFHVLG
DNNKCYAKIICNIKDN ERVVGFHVLG
KV389434.1:subs58312 gaaattgaaataaagaGTAAGTG Intron 12 TAGgcgggtcgcg
aaaagacattgataaa<0-----[58360:62297]-0>agttgtattg
tccattaaactttact attgctcagt
SPP00000376_2.0 599 PNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE
PNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE
PNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE
KV389434.1:subs62328 caggggacgtgggcatgcaaaccgaaagaccgtgg
cacgatcagtccctaggtcaaatagctgtactgca
attaataaccatagatagcaaggccatacctctag
SPP00000376_2.0 634 VFTTLSVTKRSGASILQAGC
VFTTLSVTKRSGASILQAGC
VFTTLSVTKRSGASILQAGC
KV389434.1:subs62433 GTGGGTT Intron 13 CAGgtaactgaactggaaccggt
<0-----[62433:72589]-0>ttcctctcagcgcgttacgg
acaactgcactgaccggtcc
//
Making a G in phase 1 intron
Making a V in phase 1 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
>KV389434.1:subseq(1333459,100236).pep
TEDGRALEGALSELAAETDLPVVFVKQRKIGGRGPTLKAYQEGRLQKLLKMNGPEGLPES
YDYDLIIIGGGSGGLAAAKARLLEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIP
KKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVV
YENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL
PYCPGKTLIVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQEMANKIGEHMEEHGIK
FIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVLLAIGRDACTRKIGLETVG
VKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKVELTPVAIQAGRLLAQRLYAGSTVKCD
YENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKII
CNIKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTK
RSGASILQAGC
//
>KV389434.1:subseq(1333459,100236).[14406:72649].sp
ACAGAGGACGGTCGGGCCCTGGAAGGAGCGCTCTCGGAATTGGCCGCGGAAACCGACCTG
CCAGTTGTGTTTGTGAAACAGAGAAAGATAGGCGGCCGTGGTCCAACCTTGAAGGCTTAT
CAGGAGGGCAGACTTCAAAAGCTACTAAAAATGAACGGCCCTGAGGGTCTTCCCGAGTCC
TATGACTATGACCTTATCATCATTGGAGGTGGCTCTGGAGGCCTAGCAGCTGCTAAGGCA
AGGCTCCTTGAAGCAGCCCAATATGGCAAGAAGGTGATGGTCCTGGACTTTGTCACTCCC
ACCCCTCTTGGAACTAGATGGGGTCTCGGAGGAACATGTGTGAATGTGGGTTGCATACCT
AAAAAACTGATGCACCAAGCTGCTTTGTTAGGACAAGCCCTACAAGACTCTCGAAACTAT
GGATGGAAAGTCGAGGAGACAGTTAAGCATGATTGGGACAGAATGATAGAAGCTGTACAG
AATCACATTGGCTCTTTGAACTGGGGCTACCGGGTAGCTCTGCGGGAGAAGAAAGTTGTC
TATGAGAATGCTTATGGGCAATTTATTGGTCCTCACAGGATTAAGGCAACAAATAATAAA
GGCAAAGAAAAGATTTATTCAGCAGAGAGATTTCTCATTGCCACTGGTGAAAGACCACGT
TACTTGGGCATCCCTGGTGACAAAGAATACTGCATCAGCAGTGATGATCTTTTCTCCTTA
CCTTACTGCCCGGGGAAGACCCTCATCGTTGGAGCATCCTATGTTGCTTTGGAATGTGCT
GGATTTCTTGCTGGTATTGGTTTAGATGTCACTGTTATGGTTAGGTCCATTCTTCTTAGA
GGATTTGACCAGGAAATGGCCAACAAAATTGGTGAACACATGGAAGAACATGGCATCAAG
TTTATAAGACAGTTCGTACCAATTAAAGTCGAACAAATTGAAGCAGGGACACCAGGCCGA
CTCCGAGTAGTAGCTCAGTCTACCAATAGTGAGGAAATCATTGAAGGAGAGTATAATACG
GTGTTGTTGGCAATAGGCAGAGATGCTTGCACAAGAAAAATTGGCTTAGAAACTGTAGGG
GTGAAGATAAATGAAAAGACTGGAAAAATACCTGTCACAGATGAAGAGCAGACCAACGTG
CCTTACATCTATGCCATTGGCGATATATTGGAGGGTAAGGTGGAGCTTACCCCAGTTGCA
ATCCAGGCAGGAAGATTGCTGGCTCAGAGGCTCTATGCAGGTTCCACTGTTAAGTGTGAC
TATGAAAATGTTCCGACCACTGTATTTACTCCTTTGGAATATGGAGCTTGTGGCCTTTCT
GAGGAGAAAGCTGTGGAGAAGTTTGGGGAAGAAAATATTGAGGTTTACCATAGTTACTTT
TGGCCATTGGAATGGACGATTCCATCAAGAGATAACAACAAATGTTATGCAAAAATAATC
TGTAATATTAAAGACAATGAACGTGTTGTGGGCTTTCACGTACTGGGTCCAAATGCTGGA
GAAGTTACACAAGGCTTCGCAGCTGCACTGAAATGTGGACTGACCAAAAAACAGCTGGAC
AGCACAATTGGAATCCACCCTGTCTGTGCAGAGGTATTCACAACACTCTCTGTGACCAAA
CGCTCTGGGGCAAGCATCCTGCAGGCTGGCTGC
//
KV389434.1:subseq(1333459,100236) GeneWise match 14406 72649 1077.27 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 14406 14519 0.00 + 0 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise intron 14520 37699 0.00 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 37700 37834 0.00 + 0 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise intron 37835 40524 0.00 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 40525 40597 0.00 + 0 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise intron 40598 42924 0.00 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 42925 43044 0.00 + 2 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise intron 43045 46794 0.00 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 46795 46937 0.00 + 2 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise intron 46938 47424 0.00 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 47425 47540 0.00 + 0 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise intron 47541 50004 0.00 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 50005 50230 0.00 + 1 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise intron 50231 53293 0.00 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 53294 53386 0.00 + 0 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise intron 53387 54571 0.00 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 54572 54648 0.00 + 0 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise intron 54649 55314 0.00 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 55315 55471 0.00 + 1 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise intron 55472 55997 0.00 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 55998 56105 0.00 + 0 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise intron 56106 58263 0.00 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 58264 58359 0.00 + 0 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise intron 58360 62297 0.00 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 62298 62432 0.00 + 0 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise intron 62433 72589 0.00 + . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 72590 72649 0.00 + 0 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
//
genewise output
Score 19.59 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000376_2.0 18 QTKGKNGGGRRRSAKDHHPSKTLPENPAAFTSTDTA
++KG GGG+ R+ P K L EN A T+T+
RSKGALGGGKHRTCGCREP-KNLLENSALDLGTETS
KV389434.1:sub-72803 ataggtgggacaatgtcgc aaccgatgtgtgagaa
gcagctgggaagcggggac aattaacctatgcacg
acggcgcttgcgatgtagc gctaacccgtgcgagc
//
>KV389434.1:subseq(1333459,100236).pep
RSKGALGGGKHRTCGCREPKNLLENSALDLGTETS
//
>KV389434.1:subseq(1333459,100236).[72803:72697].sp
AGATCCAAGGGGGCCTTGGGCGGTGGTAAGCACAGGACATGTGGGTGTCGAGAGCCCAAG
AACCTTCTAGAAAACTCCGCCTTGGATTTGGGCACGGAAACGAGC
//
KV389434.1:subseq(1333459,100236) GeneWise match 72803 72699 19.59 - . KV389434.1:subseq(1333459,100236)-genewise-prediction-1
KV389434.1:subseq(1333459,100236) GeneWise cds 72803 72699 0.00 - 0 KV389434.1:subseq(1333459,100236)-genewise-prediction-1
//