Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000009_1.0.fa -t ./SPP00000009_1.0/fastasubseq/KV390107.1_fastasubseq.fa]
Hostname: [ws101072u]
C4 Alignment:
------------
Query: SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Homo sapiens # Complete
Target: KV390107.1:subseq(473451,100206) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold681, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 747
Query range: 21 -> 220
Target range: 75356 -> 79932
22 : ThrLeuLysProGlnAsnArgLysValAspCysAsnLysGlyValThrGlyThrIleTyr : 41
:::|||||| ::: :::::!||||||:!!!:!! ! !! !||||||||||||
SerLeuLysLysLysIlePheGlnMetAspCysHisArgAspGlnLysGlyThrIleTyr
75357 : tcacttaaaaaaaaaatcttccagatGGATTGTCACAGAGATCAAAAAGGCACCATCTAT : 75414
42 : GluTyrGlyAlaLeuThrLeuAsnGlyGluGluTyrIleGlnPheLysGlnPheAlaGly : 61
!!:|||! !|||:!!! !|||||| !:!!||||||:!!! ||||||!:!!:!!.!|||
AspTyrGluAlaIleMetLeuAsnLysLysGluTyrValProPheLysArgTyrValGly
75415 : GACTATGAGGCCATCATGCTTAATAAGAAGGAATACGTTCCCTTCAAGCGGTATGTGGGC : 75474
62 : LysHisValLeuPheValAsnValAlaAlaTyrUnkGlyLeuAlaAlaGlnTyrPro{G} : 81
|||||||||||||||||||||||||||.!!||| ||||||.!!||||||||||||{|}
LysHisValLeuPheValAsnValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G}
75475 : AAGCACGTCCTCTTTGTCAACGTGGCTACCTACTGTGGTCTGACAGCACAATATCCT{G} : 75534
82 : >>>> Target Intron 1 >>>> {lu}LeuAsnAlaLeuGlnGluGluLeuLys : 90
2023 bp {||}|||||||||||||||||||||||||||
++ ++{lu}LeuAsnAlaLeuGlnGluGluLeuLys
75535 : gt.........................ag{AA}CTGAATGCACTCCAGGAGGAGCTGAAG : 77584
91 : AsnPheGlyValIleValLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGly : 110
!||||||:!!:!!||||||!.!||||||||||||||||||||||||||||||||||||
ProPheGlyLeuValValLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGly
77585 : CCCTTTGGTCTAGTTGTGCTGGGCTTTCCCTGCAACCAGTTTGGAAAGCAAGAACCAGGA : 77644
111 : ThrAsnSerGluIleLeuLeuGlyLeu{Ly} >>>> Target Intron 2 >>>> : 120
!|||!.!||||||||| ||||||{||} 418 bp
AspAsnLysGluIleLeuProGlyLeu{Ly}++ ++
77645 : GATAACAAAGAGattcttcctgggctc{aa}gt.........................ag : 78092
121 : {s}TyrValCysProGlySerGlyPheValProSerPheGlnLeuPheGluLysGlyAsp : 139
{|}|||||| !!||||||.!!||||||||||||!:!||||||||||||||||||||||||
{s}TyrValArgProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAsp
78093 : {G}TATGTCCGTCCAGGGGGAGGATTTGTACCTAATTTCCAGCTTTTTGAGAAAGGAGAT : 78149
140 : ValAsnGlyGluLysGluGlnLysValPheThrPheLeuLys >>>> Target Intr : 154
||||||||||||||||||||||||||||||!:!||||||||| 1538 bp
ValAsnGlyGluLysGluGlnLysValPheSerPheLeuLys++
78150 : GTGAATggtgaaaaagaacagaaagtctTCAGCTTCTTGAAGgt................ : 78196
155 : on 3 >>>> AsnSerCysProProThrSerAspLeuLeuGlySerSerSerGlnLeuP : 170
:!!|||||||||! ! !!|||!!::!!||||||!!!! !!.!...:!!!
++HisSerCysProHisProSerGluIleLeuGlyThrPheLysSerIleS
78197 : .........agCACTCCTGTCCTCATCCCTCTGAGATTTTGGGCACATTCAAATCTATAT : 79780
171 : heTrpGluProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyP : 190
!|||.!.|||:!:||||||||||||||||||||||||||||||||||||||||||||||
erTrpAsnProValLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyP
79781 : CCTGGAACCCTGTCAAAGTCCATGACATCCGTTGGAACTTTGAAAAGTTCCTGGTGGGGC : 79840
191 : roAspGlyValProValMetHisTrpPheHisGlnAlaProValSerThrValLysSerA : 210
||:!!|||:!!|||||||||!..|||! !||||||||| !!|||||| !||||||:!!|
roAsnGlyIleProValMetArgTrpSerHisGlnAlaThrValSerLeuValLysAlaA
79841 : CCAATGGAATCCCTGTCATGCGGTGGTCCCACCAGGCCACAGTCAGCTTAGTCAAGGCAG : 79900
211 : spIleLeuGluTyrLeuLysGlnPheAsnThr : 220
|||||:!!! |||||||||||||||!!.|||
spIleValAlaTyrLeuLysGlnPheLysThr
79901 : ACATCGTGGCCTACTTGAAGCAATTCAAAACC : 79932
vulgar: SPP00000009_1.0 21 220 . KV390107.1:subseq(473451,100206) 75356 79932 + 747 M 59 177 S 0 1 5 0 2 I 0 2019 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 414 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1534 3 0 2 M 67 201
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local gene 75357 79932 747 + . gene_id 1 ; sequence SPP00000009_1.0 ; gene_orientation +
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local cds 75357 75534 . + .
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local exon 75357 75534 . + . insertions 0 ; deletions 0
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice5 75535 75536 . + . intron_id 1 ; splice_site "GT"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local intron 75535 77557 . + . intron_id 1
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice3 77556 77557 . + . intron_id 0 ; splice_site "AG"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local cds 77558 77675 . + .
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local exon 77558 77675 . + . insertions 0 ; deletions 0
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice5 77676 77677 . + . intron_id 2 ; splice_site "gt"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local intron 77676 78093 . + . intron_id 2
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice3 78092 78093 . + . intron_id 1 ; splice_site "AG"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local cds 78094 78193 . + .
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local exon 78094 78193 . + . insertions 0 ; deletions 0
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice5 78194 78195 . + . intron_id 3 ; splice_site "GT"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local intron 78194 79731 . + . intron_id 3
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice3 79730 79731 . + . intron_id 2 ; splice_site "AG"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local cds 79732 79932 . + .
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local exon 79732 79932 . + . insertions 0 ; deletions 0
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local similarity 75357 79932 747 + . alignment_id 1 ; Query SPP00000009_1.0 ; Align 75357 22 177 ; Align 77560 82 114 ; Align 78095 121 99 ; Align 79732 154 201
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Homo sapiens # Complete
Target: KV390107.1:subseq(473451,100206) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold681, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 990
Query range: 0 -> 216
Target range: 60071 -> 50002
1 : MetPheGlnGlnPheGlnAlaSerCysLeuValLeuPhePheLeuValGlyPheAlaGln : 20
|||.!!!:!|||||||||||||||||||||||||||||||||||||||.!!|||||||||
MetIleArgGlnPheGlnAlaSerCysLeuValLeuPhePheLeuValSerPheAlaGln
60071 : ATGATCCGGCAGTTCCAAGCGTCCTGTCTTGTCCTGTTTTTCCTGGTTAGCTTTGCTCAG : 60014
21 : GlnThrLeuLysProGlnAsnArgLys >>>> Target Intron 1 >>>> ValA : 31
|||||||||||||||:!!:!!|||||| 3478 bp ||||
GlnThrLeuLysProGluAspArgLys++ ++ValA
60013 : CAGACCCTAAAGCCTGAAGATAGGAAGgt.........................agGTGG : 56503
32 : spCysAsnLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThrLeuAsnGlyG : 51
|||||:!!|||..!|||||||||||||||||||||||||||||||||||||||!:!||||
spCysAspLysAsnValThrGlyThrIleTyrGluTyrGlyAlaLeuThrLeuSerGlyG
56502 : ATTGCGACAAAAACGTGACAGGCACCATCTATGAGTATGGAGCCCTCACCCTCAGCGGCG : 56443
52 : luGluTyrIleGlnPheLysGlnPheAlaGlyLysHisValLeuPheValAsnValAlaA : 71
|||||||||||||||||||||||||||||||||||! !:!!||||||||||||||||||.
luGluTyrIleGlnPheLysGlnPheAlaGlyLysProIleLeuPheValAsnValAlaT
56442 : AGGAGTACATCCAGTTCAAGCAGTTTGCAGGCAAGCCCATCCTGTTTGTCAATGTAGCCA : 56383
72 : laTyrUnkGlyLeuAlaAlaGlnTyrPro{G} >>>> Target Intron 2 >>>> : 81
!!||| .!!|||.!!||||||||||||{|} 4236 bp
hrTyrCysSerLeuThrAlaGlnTyrPro{G}++ +
56382 : CCTACTGCAGCTTGACAGCTCAGTATCCT{G}gt.........................a : 52118
82 : {lu}LeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyValIleValLeuAlaPheP : 100
{||}|||||||||||||||||||||||||||!:!.!.|||||||||||||||!.!||||
+{lu}LeuAsnAlaLeuGlnGluGluLeuLysSerLeuGlyValIleValLeuGlyPheP
52117 : g{AA}CTGAATGCGCTCCAGGAGGAGCTGAAGAGCCTGGGAGTCATTGTGCTGGGCTTTC : 52060
101 : roCysAsnGlnPheGlyLysGlnGluProGlyThrAsnSerGluIleLeuLeuGlyLeu{ : 120
||||||||||||||||||||||||||||||||.!!||||||||||||||||||||||||{
roCysAsnGlnPheGlyLysGlnGluProGlyAlaAsnSerGluIleLeuLeuGlyLeu{
52059 : CCTGCAACCAGTTTGGAAAACAAGAACCAGGAGCAAACTCAGAGATACTTCTTGGTCTC{ : 52000
121 : Ly} >>>> Target Intron 3 >>>> {s}TyrValCysProGlySerGlyPheV : 129
||} 500 bp {|}|||||| !!||||||||||||||||
Ly}++ ++{s}TyrValArgProGlySerGlyPheV
51999 : AA}gt.........................ag{G}TATGTGCGTCCAGGTAGCGGCTTTG : 51473
130 : alProSerPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysValP : 149
|||||!:!||||||||||||||||||||||||||||||||||||||||||||||||||||
alProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysValP
51472 : TACCCAATTTCCAGCTCTTTGAGAAAGGGGATGTGaatggagaaaaagaacagaaggtCT : 51413
150 : heThrPheLeuLys >>>> Target Intron 4 >>>> AsnSerCysProProTh : 159
|||||||||||||| 1207 bp |||:!!|||||||||||
heThrPheLeuLys++ ++AsnAlaCysProProTh
51412 : TTACTTTCCTGAAGgt.........................agAACGCCTGCCCTCCGAC : 50176
160 : rSerAspLeuLeuGlySerSerSerGlnLeuPheTrpGluProMetLysValHisAspIl : 179
||||||||||||||||||||||!:!|||||||||||||||||||||||||||||||||||
rSerAspLeuLeuGlySerSerAsnGlnLeuPheTrpGluProMetLysValHisAspIl
50175 : CTCTGATCTTTTGGGCTCATCAAACCAGCTCTTCTGGGAGCCCATGAAGGTCCATGACAT : 50116
180 : eArgTrpAsnPheGluLysPheLeuValGlyProAspGlyValProValMetHisTrpPh : 199
|||||||||||||||||||||||||||||||||| !!|||||||||||||||!.!|||||
eArgTrpAsnPheGluLysPheLeuValGlyProHisGlyValProValMetArgTrpPh
50115 : CCGCTGGAACTTTGAAAAATTTCTGGTGGGGCCCCATGGAGTCCCTGTCATGCGCTGGTT : 50056
200 : eHisGlnAlaProValSerThrValLysSerAspIleLeuGluTyrLeuLys : 216
||||... !||||||||||||||||||||||||||||||! !|||||||||
eHisSerIleProValSerThrValLysSerAspIleLeuValTyrLeuLys
50055 : CCACAGTATTCCAGTCAGCACAGTCAAGTCAGACATCCTGGTGTACCTAAAG : 50003
vulgar: SPP00000009_1.0 0 216 . KV390107.1:subseq(473451,100206) 60071 50002 - 990 M 29 87 5 0 2 I 0 3474 3 0 2 M 51 153 S 0 1 5 0 2 I 0 4232 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 496 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1203 3 0 2 M 63 189
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local gene 50003 60071 990 - . gene_id 1 ; sequence SPP00000009_1.0 ; gene_orientation +
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local cds 59985 60071 . - .
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local exon 59985 60071 . - . insertions 0 ; deletions 0
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice5 59983 59984 . - . intron_id 1 ; splice_site "GT"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local intron 56507 59984 . - . intron_id 1
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice3 56507 56508 . - . intron_id 0 ; splice_site "AG"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local cds 56353 56506 . - .
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local exon 56353 56506 . - . insertions 0 ; deletions 0
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice5 56351 56352 . - . intron_id 2 ; splice_site "GT"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local intron 52117 56352 . - . intron_id 2
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice3 52117 52118 . - . intron_id 1 ; splice_site "AG"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local cds 51999 52116 . - .
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local exon 51999 52116 . - . insertions 0 ; deletions 0
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice5 51997 51998 . - . intron_id 3 ; splice_site "GT"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local intron 51499 51998 . - . intron_id 3
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice3 51499 51500 . - . intron_id 2 ; splice_site "AG"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local cds 51399 51498 . - .
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local exon 51399 51498 . - . insertions 0 ; deletions 0
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice5 51397 51398 . - . intron_id 4 ; splice_site "GT"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local intron 50192 51398 . - . intron_id 4
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local splice3 50192 50193 . - . intron_id 3 ; splice_site "AG"
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local cds 50003 50191 . - .
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local exon 50003 50191 . - . insertions 0 ; deletions 0
KV390107.1:subseq(473451,100206) exonerate:protein2genome:local similarity 50003 60071 990 - . alignment_id 1 ; Query SPP00000009_1.0 ; Align 60072 1 87 ; Align 56507 30 153 ; Align 52115 82 114 ; Align 51498 121 99 ; Align 50192 154 189
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis