Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000314_2.0.fa -t ./SPP00000314_2.0/fastasubseq/KV390107.1_fastasubseq.fa]
Hostname: [ws101073u]
C4 Alignment:
------------
Query: SPP00000314_2.0 # Protein # Glutathione peroxidase 5 (GPx5) # Marmoset
Target: KV390107.1:subseq(503168,100218) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold681, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 999
Query range: 0 -> 194
Target range: 45657 -> 50218
1 : PheGlnMetAspCysHisArgAspGlnLysAspThrIleTyrAspTyrGluAlaIleMet : 20
||||||||||||||||||||||||||||||! !|||||||||||||||||||||||||||
PheGlnMetAspCysHisArgAspGlnLysGlyThrIleTyrAspTyrGluAlaIleMet
45658 : ttccagatGGATTGTCACAGAGATCAAAAAGGCACCATCTATGACTATGAGGCCATCATG : 45715
21 : LeuAsnGluLysGluTyrValProPheLysArgTyrValGlyLysHisValLeuPheVal : 40
||||||:!!|||||||||||||||||||||||||||||||||||||||||||||||||||
LeuAsnLysLysGluTyrValProPheLysArgTyrValGlyLysHisValLeuPheVal
45716 : CTTAATAAGAAGGAATACGTTCCCTTCAAGCGGTATGTGGGCAAGCACGTCCTCTTTGTC : 45775
41 : AsnValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G} >>>> Target Intr : 54
|||||||||||||||||||||||||||||||||||||||{|} 2023 bp
AsnValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G}++
45776 : AACGTGGCTACCTACTGTGGTCTGACAGCACAATATCCT{G}gt................ : 45820
55 : on 1 >>>> {lu}LeuAsnAlaLeuGlnGluGluLeuLysProPheGlyLeuValVal : 69
{||}|||||||||||||||||||||||||||||||||||||||||||||
++{lu}LeuAsnAlaLeuGlnGluGluLeuLysProPheGlyLeuValVal
45821 : .........ag{AA}CTGAATGCACTCCAGGAGGAGCTGAAGCCCTTTGGTCTAGTTGTG : 47885
70 : LeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLysGluIleLeu : 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLysGluIleLeu
47886 : CTGGGCTTTCCCTGCAACCAGTTTGGAAAGCAAGAACCAGGAGATAACAAAGAGattctt : 47945
90 : ProGlyLeu{Ly} >>>> Target Intron 2 >>>> {s}TyrValArgProGly : 98
|||||||||{||} 418 bp {|}|||||||||||||||
ProGlyLeu{Ly}++ ++{s}TyrValArgProGly
47946 : cctgggctc{aa}gt.........................ag{G}TATGTCCGTCCAGGG : 48390
99 : GlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGlu : 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGlu
48391 : GGAGGATTTGTACCTAATTTCCAGCTTTTTGAGAAAGGAGATGTGAATggtgaaaaagaa : 48450
119 : GlnLysValPheSerPheLeuLys >>>> Target Intron 3 >>>> HisAlaC : 129
|||||||||||||||||||||||| 1538 bp |||:!!|
GlnLysValPheSerPheLeuLys++ ++HisSerC
48451 : cagaaagtctTCAGCTTCTTGAAGgt.........................agCACTCCT : 50021
130 : ysProHisProSerGluIleLeuGlyThrPheLysSerIleSerTrpAspProValLysV : 149
|||||||||||||||||||||||||||||||||||||||||||||||:!!||||||||||
ysProHisProSerGluIleLeuGlyThrPheLysSerIleSerTrpAsnProValLysV
50022 : GTCCTCATCCCTCTGAGATTTTGGGCACATTCAAATCTATATCCTGGAACCCTGTCAAAG : 50081
150 : alHisAspValArgTrpAsnPheGluLysPheLeuValGlyProAspGlyIleProValM : 169
||||||||:!!|||||||||||||||||||||||||||||||||:!!|||||||||||||
alHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAsnGlyIleProValM
50082 : TCCATGACATCCGTTGGAACTTTGAAAAGTTCCTGGTGGGGCCCAATGGAATCCCTGTCA : 50141
170 : etArgTrpSerHisGlnAlaThrValSerIleValLysAlaAspIleValAlaAsnLeuL : 189
|||||||||||||||||||||||||||||:!!||||||||||||||||||||| !!||||
etArgTrpSerHisGlnAlaThrValSerLeuValLysAlaAspIleValAlaTyrLeuL
50142 : TGCGGTGGTCCCACCAGGCCACAGTCAGCTTAGTCAAGGCAGACATCGTGGCCTACTTGA : 50201
190 : ysGlnPheLysThrGln : 194
||||||||||||||:!!
ysGlnPheLysThrLys
50202 : AGCAATTCAAAACCAAA : 50218
vulgar: SPP00000314_2.0 0 194 . KV390107.1:subseq(503168,100218) 45657 50218 + 999 M 53 159 S 0 1 5 0 2 I 0 2019 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 414 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1534 3 0 2 M 68 204
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local gene 45658 50218 999 + . gene_id 1 ; sequence SPP00000314_2.0 ; gene_orientation +
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local cds 45658 45817 . + .
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local exon 45658 45817 . + . insertions 0 ; deletions 0
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local splice5 45818 45819 . + . intron_id 1 ; splice_site "GT"
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local intron 45818 47840 . + . intron_id 1
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local splice3 47839 47840 . + . intron_id 0 ; splice_site "AG"
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local cds 47841 47958 . + .
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local exon 47841 47958 . + . insertions 0 ; deletions 0
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local splice5 47959 47960 . + . intron_id 2 ; splice_site "gt"
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local intron 47959 48376 . + . intron_id 2
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local splice3 48375 48376 . + . intron_id 1 ; splice_site "AG"
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local cds 48377 48476 . + .
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local exon 48377 48476 . + . insertions 0 ; deletions 0
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local splice5 48477 48478 . + . intron_id 3 ; splice_site "GT"
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local intron 48477 50014 . + . intron_id 3
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local splice3 50013 50014 . + . intron_id 2 ; splice_site "AG"
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local cds 50015 50218 . + .
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local exon 50015 50218 . + . insertions 0 ; deletions 0
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local similarity 45658 50218 999 + . alignment_id 1 ; Query SPP00000314_2.0 ; Align 45658 1 159 ; Align 47843 55 114 ; Align 48378 94 99 ; Align 50015 127 204
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000314_2.0 # Protein # Glutathione peroxidase 5 (GPx5) # Marmoset
Target: KV390107.1:subseq(503168,100218) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold681, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 733
Query range: 0 -> 189
Target range: 26795 -> 20285
1 : PheGlnMetAspCysHisArgAspGlnLysAspThrIleTyrAspTyrGluAlaIleMet : 20
||||||:!!|||||| !!!:!:!! !! !! !|||||||||!!:|||! !|||:!!!
PheGlnValAspCysAspLysAsnValThrGlyThrIleTyrGluTyrGlyAlaLeuThr
26795 : TTCCAGGTGGATTGCGACAAAAACGTGACAGGCACCATCTATGAGTATGGAGCCCTCACC : 26738
21 : LeuAsnGluLysGluTyrValProPheLysArgTyrValGlyLysHisValLeuPheVal : 40
|||!:!! :!!||||||:!!! !||||||!:!!:!!.!||||||! !:!!|||||||||
LeuSerGlyGluGluTyrIleGlnPheLysGlnPheAlaGlyLysProIleLeuPheVal
26737 : CTCAGCGGCGAGGAGTACATCCAGTTCAAGCAGTTTGCAGGCAAGCCCATCCTGTTTGTC : 26678
41 : AsnValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G} >>>> Target Intr : 54
||||||||||||||||||.!!||||||||||||||||||{|} 4236 bp
AsnValAlaThrTyrCysSerLeuThrAlaGlnTyrPro{G}++
26677 : AATGTAGCCACCTACTGCAGCTTGACAGCTCAGTATCCT{G}gt................ : 26633
55 : on 1 >>>> {lu}LeuAsnAlaLeuGlnGluGluLeuLysProPheGlyLeuValVal : 69
{||}||||||||||||||||||||||||||| !.!.|||:!!:!!|||
++{lu}LeuAsnAlaLeuGlnGluGluLeuLysSerLeuGlyValIleVal
26632 : .........ag{AA}CTGAATGCGCTCCAGGAGGAGCTGAAGAGCCTGGGAGTCATTGTG : 22355
70 : LeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLysGluIleLeu : 89
||||||||||||||||||||||||||||||||||||||||||! |||..!|||||||||
LeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAlaAsnSerGluIleLeu
22354 : CTGGGCTTTCCCTGCAACCAGTTTGGAAAACAAGAACCAGGAGCAAACTCAGAGATACTT : 22295
90 : ProGlyLeu{Ly} >>>> Target Intron 2 >>>> {s}TyrValArgProGly : 98
! !||||||{||} 500 bp {|}|||||||||||||||
LeuGlyLeu{Ly}++ ++{s}TyrValArgProGly
22294 : CTTGGTCTC{AA}gt.........................ag{G}TATGTGCGTCCAGGT : 21768
99 : GlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGlu : 118
.!!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SerGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGlu
21767 : AGCGGCTTTGTACCCAATTTCCAGCTCTTTGAGAAAGGGGATGTGaatggagaaaaagaa : 21708
119 : GlnLysValPheSerPheLeuLys >>>> Target Intron 3 >>>> HisAlaC : 129
||||||||||||!!!||||||||| 1207 bp :!!||||
GlnLysValPheThrPheLeuLys++ ++AsnAlaC
21707 : cagaaggtCTTTACTTTCCTGAAGgt.........................agAACGCCT : 20468
130 : ysProHisProSerGluIleLeuGlyThrPheLysSerIleSerTrpAspProValLysV : 149
|||||! !!|||!!::!!||||||:!!! !!...!:!!! !|||!!:|||:!!||||
ysProProThrSerAspLeuLeuGlySerSerAsnGlnLeuPheTrpGluProMetLysV
20467 : GCCCTCCGACCTCTGATCTTTTGGGCTCATCAAACCAGCTCTTCTGGGAGCCCATGAAGG : 20408
150 : alHisAspValArgTrpAsnPheGluLysPheLeuValGlyProAspGlyIleProValM : 169
||||||||:!!||||||||||||||||||||||||||||||||| !!|||:!!|||||||
alHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProHisGlyValProValM
20407 : TCCATGACATCCGCTGGAACTTTGAAAAATTTCTGGTGGGGCCCCATGGAGTCCCTGTCA : 20348
170 : etArgTrpSerHisGlnAlaThrValSerIleValLysAlaAspIleValAlaAsnLeuL : 189
||||||||! !|||... ! !!||||||! !||||||:!!||||||:!!!.! !!||||
etArgTrpPheHisSerIleProValSerThrValLysSerAspIleLeuValTyrLeuL
20347 : TGCGCTGGTTCCACAGTATTCCAGTCAGCACAGTCAAGTCAGACATCCTGGTGTACCTAA : 20288
190 : ys : 189
||
ys
20287 : AG : 20286
vulgar: SPP00000314_2.0 0 189 . KV390107.1:subseq(503168,100218) 26795 20285 - 733 M 53 159 S 0 1 5 0 2 I 0 4232 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 496 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1203 3 0 2 M 63 189
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local gene 20286 26795 733 - . gene_id 1 ; sequence SPP00000314_2.0 ; gene_orientation +
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local cds 26636 26795 . - .
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local exon 26636 26795 . - . insertions 0 ; deletions 0
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local splice5 26634 26635 . - . intron_id 1 ; splice_site "GT"
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local intron 22400 26635 . - . intron_id 1
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local splice3 22400 22401 . - . intron_id 0 ; splice_site "AG"
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local cds 22282 22399 . - .
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local exon 22282 22399 . - . insertions 0 ; deletions 0
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local splice5 22280 22281 . - . intron_id 2 ; splice_site "GT"
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local intron 21782 22281 . - . intron_id 2
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local splice3 21782 21783 . - . intron_id 1 ; splice_site "AG"
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local cds 21682 21781 . - .
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local exon 21682 21781 . - . insertions 0 ; deletions 0
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local splice5 21680 21681 . - . intron_id 3 ; splice_site "GT"
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local intron 20475 21681 . - . intron_id 3
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local splice3 20475 20476 . - . intron_id 2 ; splice_site "AG"
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local cds 20286 20474 . - .
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local exon 20286 20474 . - . insertions 0 ; deletions 0
KV390107.1:subseq(503168,100218) exonerate:protein2genome:local similarity 20286 26795 733 - . alignment_id 1 ; Query SPP00000314_2.0 ; Align 26796 1 159 ; Align 22398 55 114 ; Align 21781 94 99 ; Align 20475 127 189
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis