Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000036_1.0.fa -t ./SPP00000036_1.0/fastasubseq/KV389994.1_fastasubseq.fa]
Hostname: [ws101072u]
C4 Alignment:
------------
Query: SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo sapiens # Complete
Target: KV389994.1:subseq(492455,100245) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold568, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 3190
Query range: 59 -> 754
Target range: 28770 -> 69400
60 : GlyArgGlyGluArgLeuProArgGlyPheAlaArgValValArgValAlaSerGluGly : 79
||||||||||||!:!! !||||||||||||!.!|||||| !! !|||!.!|||:!!.!!
GlyArgGlyGluGlnArgProArgGlyPheValArgValTrpIleValGlySerLysSer
28771 : gggcggggcgagCAGCGGCCTCGCGGATTCGTGCGGGTGTGGATCGTGGGCAGCAAGAGC : 28828
80 : SerValArgArgProSerGlyProValProAlaProGlnProProAlaPheArgPheVal : 99
|||||||||!.! !!|||!.!|||||||||||||||! !||| !!|||||||||||||||
SerValArgHisThrSerAlaProValProAlaProProProSerAlaPheArgPheVal
28829 : AGCGTTCGCCACACCTCAGCCCCGGTCCCGGCACCGCCGCCTTCTGCGTTTCGGTTTGTG : 28888
100 : SerArgProGlyArgAlaArgSerGluSerGluThrLeuGluArgSer >>>> Targe : 116
||| !!||||||! !||| !!|||||||||||||||||||||!:!|||
SerGlyProGlyProAlaGlySerGluSerGluThrLeuGluGlnSer--
28889 : AGCGGGCCCGGCCCGGCCGGGAGCGAGAGCGAAACCCTGGAGCAGTCGcc.......... : 28941
117 : t Intron 1 >>>> ProProGlnSerProGlyProGlyLysAlaGlyAspAlaProA : 130
36 bp !!|||:!!||||||||||||||||||||||||||||||||||
++SerProLysSerProGlyProGlyLysAlaGlyAspAlaProA
28942 : ...............agTCGCCGAAGTCGCCGGGTCCGGGAAAGGCAGGCGATGCCCCCA : 29017
131 : snArgArgSerGlyHisValArgGlyAlaArgValLeuSerProProGlyArgArgAlaA : 150
|||||||| !!|||||||||||||||||||||||| !|||||||||! !||||||||||
snArgArgProGlyHisValArgGlyAlaArgValAlaSerProProGluArgArgAlaA
29018 : ACCGCCGACCGGGCCACGTCCGCGGCGCGCGCGTGGCGTCGCCGCCTGAGCGCCGCGCTC : 29077
151 : rgLeuSerSerProGlyProSerArgSerSerGluAlaArgGluGluLeuArgArgHisL : 170
|||||:!!|||||||||||||||!!!||||||||||||||||||||||||||||||!.!|
rgLeuAlaSerProGlyProSerSerSerSerGluAlaArgGluGluLeuArgArgArgL
29078 : GCCTGGCGTCCCCCGGGCCCAGCAGCTCTTCCGAGGCCCGCGAGGAGCTGCGCCGCCGCC : 29137
171 : euValGlyLeuIleGluArgSerArgValValIlePheSerLysSerTyrCysProHisS : 190
||:!!|||||||||||||||.!! !!||||||||||||||||||||||||||||||||||
euLeuGlyLeuIleGluArgGlyGlyValValIlePheSerLysSerTyrCysProHisS
29138 : TTCTGGGCCTCATCGAGCGCGGCGGGGTGGTGATCTTCAGCAAGAGCTACTGTCCCCACA : 29197
191 : erThrArg >>>> Target Intron 2 >>>> ValLysGluLeuPheSerSerLe : 200
|||||||| 5505 bp |||||||||||||||||||||||
erThrArg++ ++ValLysGluLeuPheSerSerLe
29198 : GCACGCGGgt.........................aggtGAAAGAACTCTTTTCTTCCTT : 34732
201 : uGlyValGluCysAsnValLeuGluLeuAspGlnVal{A} >>>> Target Intron : 213
||||!.!|||||| !!|||||||||||||||||||||{|} 1012 bp
uGlyAlaGluCysTyrValLeuGluLeuAspGlnVal{A}++
34733 : GGGAGCTGAATGTTATGTCTTGGAACTTGATCAAGTT{G}gt.................. : 34774
214 : 3 >>>> {sp}AspGlyAlaArgValGlnGluValLeuSerGluIleThrAsnGlnLy : 229
{||}|||||||||!:!:!!||||||||||||! !|||||||||||||||||
++{sp}AspGlyAlaLysIleGlnGluValLeuLeuGluIleThrAsnGlnLy
34775 : .......ag{at}gaTGGGGCCAAGATTCAAGAAGTGCTGTTAGAAATCACTAATCAGAA : 35831
230 : sThrValProAsnIlePheValAsnLysValHisValGlyGlyCysAspGlnThrPheGl : 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
sThrValProAsnIlePheValAsnLysValHisValGlyGlyCysAspGlnThrPheGl
35832 : AACCGTGCCcaatatttttgtgaataaagtgCATGTAGGTGGATGTGACCAAACTTTCCA : 35891
250 : n >>>> Target Intron 4 >>>> AlaTyrGlnSerGlyLeuLeuGlnLysLeu : 259
| 2812 bp ||||||||||||||||||||||||||||||
n++ ++AlaTyrGlnSerGlyLeuLeuGlnLysLeu
35892 : Ggt.........................agGCATATCAGAGTGGTTTGTTGCAGAAGCTC : 38733
260 : LeuGlnGluAspLeuAlaTyrAspTyrAspLeuIleIleIleGlyGlyGlySerGlyGly : 279
|||!!.||||||! !|||||||||||||||||||||:!!|||||||||||||||||||||
LeuHisGluAspSerAlaTyrAspTyrAspLeuIleValIleGlyGlyGlySerGlyGly
38734 : CTTCATGAGGATTCAGCATATGATTATGACCTGATCGTCATCGGTGGTGGTTCTGGTGGC : 38793
280 : LeuSerCysAlaLys >>>> Target Intron 5 >>>> GluAlaAlaIleLeuG : 290
||||||||||||||| 245 bp ||||||||||||||||
LeuSerCysAlaLys++ ++GluAlaAlaIleLeuG
38794 : CTTTCGTGTGCAAAGgt.........................agGAAGCTGCCATTTTGG : 39071
291 : lyLysLysValMetValLeuAspPheValValProSerProGlnGlyThrSerTrp{G} : 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||{|}
lyLysLysValMetValLeuAspPheValValProSerProGlnGlyThrSerTrp{G}+
39072 : GAAAGAAAGTTATGGTGCTAGACTTTGTTGTCCCGTCACCTCAGGGCACATCTTGG{G}g : 39129
310 : >>>> Target Intron 6 >>>> {ly}LeuGlyGlyThrCysValAsnValGlyC : 319
1891 bp {||}||||||||||||||||||||||||||||
+ ++{ly}LeuGlyGlyThrCysValAsnValGlyC
39130 : t.........................ag{gt}CTTGGTGGCACTTGTGTAAATGTAGGTT : 41049
320 : ysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuCysAspSerA : 339
||:!!||||||||||||||||||||||||||||||||||||||||||||| !|||||||
ysValProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuHisAspSerA
41050 : GTGTTCCTAAGAAATTGATGCATCAGGCTGCCCTTTTGGGGCAGGCATTACATGACTCAA : 41109
340 : rgLysPheGlyTrpGluTyrAsnGlnGln{V} >>>> Target Intron 7 >>>> : 349
|||||||||||||||||||||||||||||{|} 3904 bp
rgLysPheGlyTrpGluTyrAsnGlnGln{V}++ +
41110 : GGAAGTTTGGCTGGGAGTATAATCAACAA{G}gt.........................a : 45042
350 : {al}ArgHisAsnTrpGluThrMetThrLysAlaIleGlnAsnHisIleSerSerLeuA : 368
{||}! !|||||||||||||||||||||||||||||||||||||||||| !!|||||||
+{al}ThrHisAsnTrpGluThrMetThrLysAlaIleGlnAsnHisIleArgSerLeuA
45043 : g{TG}ACGCACAACTGGGAGACGATGACAAAAGCGATTCAGAACCACATCCGCTCTCTAA : 45100
369 : snTrpGlyTyrArgLeuSerLeuArgGluLysAlaValAlaTyrValAsnSerTyrGlyG : 388
||!::|||||| !!||||||||||||||||||||||||||||||||||||||||||||||
snPheGlyTyrGlyLeuSerLeuArgGluLysAlaValAlaTyrValAsnSerTyrGlyG
45101 : ACTTTGGCTACGGGTTGTCTTTGAGGGAAAAGGCTGTGGCCTATGTCAATTCCTATGGAG : 45160
389 : luPheValGluHisHisLysIleLys >>>> Target Intron 8 >>>> AlaTh : 398
|||||||||||||||||||||||||| 3920 bp |||||
luPheValGluHisHisLysIleLys++ ++AlaTh
45161 : AATTTGTTGAACATCACAAAATAAAGgt.........................agGCAAC : 49110
399 : rAsnLysLysGlyGlnGluThrTyrTyrThrAlaAlaGlnPheValIleAlaThrGlyGl : 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rAsnLysLysGlyGlnGluThrTyrTyrThrAlaAlaGlnPheValIleAlaThrGlyGl
49111 : CAATAAAAAAGGACAGGAAACTTATTATACTGCTGCACAGTTTGTCATAGCAACGGGTGA : 49170
419 : uArgProArgTyrLeuGlyIleGlnGlyAspLysGluTyrCysIleThr{Se} >>>> : 435
|||||||||||||||||||||||||||||||||||||||||||||||||{||}
uArgProArgTyrLeuGlyIleGlnGlyAspLysGluTyrCysIleThr{Se}++
49171 : AAGGCCGCGGTATTTAGGAATCCAAGGAGATAAAGAATACTGTATTACC{AG}gt..... : 49225
436 : Target Intron 9 >>>> {r}AspAspLeuPheSerLeuProTyrCysProGlyLy : 447
791 bp {|}|||||||||||||||||||||||||||||||||||
++{r}AspAspLeuPheSerLeuProTyrCysProGlyLy
49226 : ....................ag{t}gatgACCTTTTTTCTCTGCCTTATTGCCCTGGCAA : 50048
448 : sThrLeuValValGlyAlaSerTyrValAlaLeuGluCysAlaGlyPheLeuAlaGlyPh : 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
sThrLeuValValGlyAlaSerTyrValAlaLeuGluCysAlaGlyPheLeuAlaGlyPh
50049 : AACGTTAGTGGTGGGTGCCTCTTACGTCGCCCTGGAGTGTGCAGGGTTTCTGGCTGGCTT : 50108
468 : eGlyLeuAspValThrValMetValArgSerIleLeuLeuArgGlyPheAspGlnGluMe : 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
eGlyLeuAspValThrValMetValArgSerIleLeuLeuArgGlyPheAspGlnGluMe
50109 : TGGCCTAGATGTCACAGTTATGGTACGCTCAATCCTTCTCCGTGGCTTTGACCAAGAAAT : 50168
488 : tAlaGluLysValGlySerTyrMetGluGlnHisGlyValLysPheLeuArgLysPheIl : 507
||||||||||||||||||||||||||||||||||||||||!:!|||||| !!||||||||
tAlaGluLysValGlySerTyrMetGluGlnHisGlyValArgPheLeuTrpLysPheIl
50169 : GGCAGAGAAAGTGGGTTCCTATATGGAGCAGCATGGTGTGAGGTTCCTATGGAAATTCAT : 50228
508 : eProValMet >>>> Target Intron 10 >>>> ValGlnGlnLeuGluLysGl : 517
|||||||||| 1260 bp ||||||||||||||||||||
eProValMet++ ++ValGlnGlnLeuGluLysGl
50229 : ACCTGTGATGgt..........................agGTTCAACAGTTGGAGAAAGG : 51518
518 : ySerProGlyLysLeuLysValLeuAlaLysSerThrGluGlyThrGluThrIleGluGl : 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||!
ySerProGlyLysLeuLysValLeuAlaLysSerThrGluGlyThrGluThrIleGluGl
51519 : TTCACCTGGAAAGCTGAAAGTATTGGCTAAATCCACTGAAGGAACAGAAACAATTGAAGA : 51578
538 : yValTyrAsnThr >>>> Target Intron 11 >>>> ValLeuLeuAlaIleGl : 547
!|||||||||||| 6870 bp |||||||||||||||||
uValTyrAsnThr++ ++ValLeuLeuAlaIleGl
51579 : AGTCTATAACacagt..........................agGTTTTGTTAGCTATTGG : 58478
548 : yArgAspSerCysThrArgLysIleGlyLeuGluLysIleGlyValLysIleAsnGlu{L : 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||{|
yArgAspSerCysThrArgLysIleGlyLeuGluLysIleGlyValLysIleAsnGlu{L
58479 : TCGTGACTCCTGTACAAGGAAAATAGGGTTGGAGAAGATTGGTGTCAAAATTAATGAG{A : 58538
568 : y} >>>> Target Intron 12 >>>> {s}SerGlyLysIleProValAsnAspV : 576
|} 570 bp {|}|||||||||||||||||||||||||
y}++ ++{s}SerGlyLysIleProValAsnAspV
58539 : A}gt..........................ag{A}AGTGGAAAAATACCTGTAAATGATG : 59135
577 : alGluGlnThrAsnValProTyrValTyrAlaValGlyAspIleLeuGluAspLysProG : 596
|||||||||||!:!||||||||||||||||||||||||||||||||||||! !|||||||
alGluGlnThrSerValProTyrValTyrAlaValGlyAspIleLeuGluGlyLysProG
59136 : TGGAACAGACCAGTGTTCCATATGTCTATGCTGTTGGGGATATTTTGGAGGGTAAGCCAG : 59195
597 : luLeuThrProValAlaIleGlnSerGlyLysLeuLeuAlaGlnArgLeuPheGlyAlaS : 616
|||||||||||||||||||||||||||||||||||||||||!:!||||||||||||||||
luLeuThrProValAlaIleGlnSerGlyLysLeuLeuAlaArgArgLeuPheGlyAlaS
59196 : AGCTCACTCCTGTCGCCATACAGTCAGGCAAGCTGCTAGCTCGGAGACTTTTTGGGGCCT : 59255
617 : erLeuGluLys >>>> Target Intron 13 >>>> CysAspTyrIleAsnValP : 626
||||||||||| 5982 bp |||||||||||||||||||
erLeuGluLys++ ++CysAspTyrIleAsnValP
59256 : CTTTAGAAAAGgt..........................agtgtgatTATATTAATGTTC : 65267
627 : roThrThrValPheThrProLeuGluTyrGlyCysCysGlyLeuSerGluGluLysAlaI : 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
roThrThrValPheThrProLeuGluTyrGlyCysCysGlyLeuSerGluGluLysAlaI
65268 : CAACTACGGTGTTTACTCCTCTGGAGTATGGTTGCTGTGGATTATCTGAAGAGAAGGCTA : 65327
647 : leGluValTyrLysLysGluAsnLeuGlu >>>> Target Intron 14 >>>> I : 656
||||||||||||||||||||||||||||| 704 bp |
leGluValTyrLysLysGluAsnLeuGlu++ ++I
65328 : TTGAAGTATATAAAAAAGAGAATCTAGAAgt..........................agA : 66061
657 : leTyrHisThrLeuPheTrpProLeuGluTrpThrValAlaGlyArgGluAsnAsnThrC : 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
leTyrHisThrLeuPheTrpProLeuGluTrpThrValAlaGlyArgGluAsnAsnThrC
66062 : TATATCATACTTTGTTCTGGCCTCTTGAATGGACAGTAGCTGGCAGAGAGAACAACACTT : 66121
677 : ysTyrAlaLysIleIleCysAsnLysPheAspHis >>>> Target Intron 15 > : 688
||||||||||||||||||||||||||||||||||| 2523 bp
ysTyrAlaLysIleIleCysAsnLysPheAspHis++
66122 : GTTACGCAAAGATAATCTGCAATAAATTCGACCATgt....................... : 66159
689 : >>> AspArgValIleGlyPheHisIleLeuGlyProAsnAlaGlyGluValThrGlnG : 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
++AspArgValIleGlyPheHisIleLeuGlyProAsnAlaGlyGluValThrGlnG
66160 : ...agGATCGGGTGATAGGGTTTCATATTCTTGGACCAAATGCCGGTGAGGTTACCCAAG : 68734
707 : lyPheAlaAlaAlaMetLysCysGlyLeuThrLysGlnLeuLeuAspAspThrIleGlyI : 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
lyPheAlaAlaAlaMetLysCysGlyLeuThrLysGlnLeuLeuAspAspThrIleGlyI
68735 : GCTTTGCAGCTGCAATGAAATGCGGTCTCACAAAACAGCTACTTGATGACACCATTGGAA : 68794
727 : leHisProThrCysGlyGlu >>>> Target Intron 16 >>>> ValPheThrT : 736
|||||||||||||||||||| 520 bp ||||||||||
leHisProThrCysGlyGlu++ ++ValPheThrT
68795 : TTCACCCCACATGTGGGGAGgt..........................agGTGTTCACAA : 69344
737 : hrLeuGluIleThrLysSerSerGlyLeuAspIleThrGlnLysGlyCysUnkGly : 754
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
hrLeuGluIleThrLysSerSerGlyLeuAspIleThrGlnLysGlyCys***Gly
69345 : CTTTGGAAATCACAAAATCCTCAGGACTAGACATCACTCAGAAAGGCTGCTGAGGC : 69400
vulgar: SPP00000036_1.0 59 754 . KV389994.1:subseq(492455,100245) 28770 69400 + 3190 M 56 168 5 0 2 I 0 32 3 0 2 M 77 231 5 0 2 I 0 5501 3 0 2 M 20 60 S 0 1 5 0 2 I 0 1008 3 0 2 S 1 2 M 36 108 5 0 2 I 0 2808 3 0 2 M 35 105 5 0 2 I 0 241 3 0 2 M 24 72 S 0 1 5 0 2 I 0 1887 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 3900 3 0 2 S 1 2 M 47 141 5 0 2 I 0 3916 3 0 2 M 38 114 S 0 2 5 0 2 I 0 787 3 0 2 S 1 1 M 75 225 5 0 2 I 0 1256 3 0 2 M 31 93 5 0 2 I 0 6866 3 0 2 M 25 75 S 0 2 5 0 2 I 0 566 3 0 2 S 1 1 M 52 156 5 0 2 I 0 5978 3 0 2 M 36 108 5 0 2 I 0 700 3 0 2 M 32 96 5 0 2 I 0 2519 3 0 2 M 45 135 5 0 2 I 0 516 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local gene 28771 69400 3190 + . gene_id 1 ; sequence SPP00000036_1.0 ; gene_orientation +
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 28771 28938 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 28771 28938 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 28939 28940 . + . intron_id 1 ; splice_site "CC"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 28939 28974 . + . intron_id 1
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 28973 28974 . + . intron_id 0 ; splice_site "AG"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 28975 29205 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 28975 29205 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 29206 29207 . + . intron_id 2 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 29206 34710 . + . intron_id 2
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 34709 34710 . + . intron_id 1 ; splice_site "ag"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 34711 34771 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 34711 34771 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 34772 34773 . + . intron_id 3 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 34772 35783 . + . intron_id 3
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 35782 35783 . + . intron_id 2 ; splice_site "ag"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 35784 35893 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 35784 35893 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 35894 35895 . + . intron_id 4 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 35894 38705 . + . intron_id 4
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 38704 38705 . + . intron_id 3 ; splice_site "AG"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 38706 38810 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 38706 38810 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 38811 38812 . + . intron_id 5 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 38811 39055 . + . intron_id 5
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 39054 39055 . + . intron_id 4 ; splice_site "aG"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 39056 39128 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 39056 39128 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 39129 39130 . + . intron_id 6 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 39129 41019 . + . intron_id 6
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 41018 41019 . + . intron_id 5 ; splice_site "ag"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 41020 41139 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 41020 41139 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 41140 41141 . + . intron_id 7 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 41140 45043 . + . intron_id 7
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 45042 45043 . + . intron_id 6 ; splice_site "AG"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 45044 45186 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 45044 45186 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 45187 45188 . + . intron_id 8 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 45187 49106 . + . intron_id 8
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 49105 49106 . + . intron_id 7 ; splice_site "AG"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 49107 49222 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 49107 49222 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 49223 49224 . + . intron_id 9 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 49223 50013 . + . intron_id 9
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 50012 50013 . + . intron_id 8 ; splice_site "ag"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 50014 50239 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 50014 50239 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 50240 50241 . + . intron_id 10 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 50240 51499 . + . intron_id 10
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 51498 51499 . + . intron_id 9 ; splice_site "AG"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 51500 51592 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 51500 51592 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 51593 51594 . + . intron_id 11 ; splice_site "gt"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 51593 58462 . + . intron_id 11
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 58461 58462 . + . intron_id 10 ; splice_site "AG"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 58463 58539 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 58463 58539 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 58540 58541 . + . intron_id 12 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 58540 59109 . + . intron_id 12
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 59108 59109 . + . intron_id 11 ; splice_site "AG"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 59110 59266 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 59110 59266 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 59267 59268 . + . intron_id 13 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 59267 65248 . + . intron_id 13
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 65247 65248 . + . intron_id 12 ; splice_site "ag"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 65249 65356 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 65249 65356 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 65357 65358 . + . intron_id 14 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 65357 66060 . + . intron_id 14
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 66059 66060 . + . intron_id 13 ; splice_site "aG"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 66061 66156 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 66061 66156 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 66157 66158 . + . intron_id 15 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 66157 68679 . + . intron_id 15
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 68678 68679 . + . intron_id 14 ; splice_site "ag"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 68680 68814 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 68680 68814 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice5 68815 68816 . + . intron_id 16 ; splice_site "GT"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local intron 68815 69334 . + . intron_id 16
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local splice3 69333 69334 . + . intron_id 15 ; splice_site "AG"
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local cds 69335 69400 . + .
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local exon 69335 69400 . + . insertions 0 ; deletions 0
KV389994.1:subseq(492455,100245) exonerate:protein2genome:local similarity 28771 69400 3190 + . alignment_id 1 ; Query SPP00000036_1.0 ; Align 28771 60 168 ; Align 28975 116 231 ; Align 34711 193 60 ; Align 35786 214 108 ; Align 38706 250 105 ; Align 39056 285 72 ; Align 41022 310 117 ; Align 45046 350 141 ; Align 49107 397 114 ; Align 50015 436 225 ; Align 51500 511 93 ; Align 58463 542 75 ; Align 59111 568 156 ; Align 65249 620 108 ; Align 66061 656 96 ; Align 68680 688 135 ; Align 69335 733 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis