Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000366_2.0.fa -t ./SPP00000366_2.0/fastasubseq/KV389988.1_fastasubseq.fa]
Hostname: [ws101092U]
C4 Alignment:
------------
Query: SPP00000366_2.0 # Protein # Methionine-R-sufoxide reductase 3 (MSRB3) # Marmoset
Target: KV389988.1:subseq(99822,100209) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold562, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 455
Query range: 104 -> 192
Target range: 41239 -> 50206
105 : GlyTrpProSerPheHisAspValIleSerSerGluAlaIleThrPheThrAspAspPhe : 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlyTrpProSerPheHisAspValIleSerSerGluAlaIleThrPheThrAspAspPhe
41240 : GGTTGGCCTTCATTCCACGATGTGATCAGTTCTGAGGCAATCACATTCACAGATGACTTT : 41297
125 : SerTyrGlyMetHisArgValGluThrSerCysSerGln >>>> Target Intron : 138
||||||||||||||||||||||||||||||||||||||| 8703 bp
SerTyrGlyMetHisArgValGluThrSerCysSerGln++
41298 : TCCTACGGGATGCACAGGGTGGAAACAAGCTGCTCTCAGgt................... : 41341
139 : 1 >>>> CysGlyAlaHisLeuGlyHisIlePheAspAspGlyProArgProThrGlyL : 155
||||||||||||||||||||||||||||||||||||||||||||||||||||
++CysGlyAlaHisLeuGlyHisIlePheAspAspGlyProArgProThrGlyL
41342 : ......agtGTGGTGCCCACCTTGGGCACATTTTTGATGATGGGCCTCGTCCAACTGGGA : 50093
156 : ysArgTyrCysIleAsnSerAlaAlaLeuSerPheThrProValAspSerAspGlyAlaA : 175
|||||||||||||||||||||||||||||||||||||||||!.!||||||! !|||||||
ysArgTyrCysIleAsnSerAlaAlaLeuSerPheThrProAlaAspSerGlyGlyAlaA
50094 : AAAGATACTGCATAAATTCGGCTGCCTTATCTTTCACACCTGCGGATAGTGGTGGTGCCG : 50153
176 : laAlaGluGlyGlySerGlyValAlaSerProAlaGlnAlaAspLysAlaGlu : 192
||.!!||||||||||||||||||||||||||||||!:!|||||||||! !|||
laThrGluGlyGlySerGlyValAlaSerProAlaArgAlaAspLysGluGlu
50154 : CCACCGAGGGGGGCAGTGGGGTCGCCAGCCCCGCCCGGGCCGACAAAGAGGAG : 50206
vulgar: SPP00000366_2.0 104 192 . KV389988.1:subseq(99822,100209) 41239 50206 + 455 M 33 99 5 0 2 I 0 8699 3 0 2 M 55 165
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389988.1:subseq(99822,100209) exonerate:protein2genome:local gene 41240 50206 455 + . gene_id 1 ; sequence SPP00000366_2.0 ; gene_orientation +
KV389988.1:subseq(99822,100209) exonerate:protein2genome:local cds 41240 41338 . + .
KV389988.1:subseq(99822,100209) exonerate:protein2genome:local exon 41240 41338 . + . insertions 0 ; deletions 0
KV389988.1:subseq(99822,100209) exonerate:protein2genome:local splice5 41339 41340 . + . intron_id 1 ; splice_site "GT"
KV389988.1:subseq(99822,100209) exonerate:protein2genome:local intron 41339 50041 . + . intron_id 1
KV389988.1:subseq(99822,100209) exonerate:protein2genome:local splice3 50040 50041 . + . intron_id 0 ; splice_site "ag"
KV389988.1:subseq(99822,100209) exonerate:protein2genome:local cds 50042 50206 . + .
KV389988.1:subseq(99822,100209) exonerate:protein2genome:local exon 50042 50206 . + . insertions 0 ; deletions 0
KV389988.1:subseq(99822,100209) exonerate:protein2genome:local similarity 41240 50206 455 + . alignment_id 1 ; Query SPP00000366_2.0 ; Align 41240 105 99 ; Align 50042 138 165
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis