Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000337_2.0.fa -t ./SPP00000337_2.0/fastasubseq/KV389978.1_fastasubseq.fa]
Hostname: [ws101072u]
C4 Alignment:
------------
Query: SPP00000337_2.0 # Protein # Selenophosphate synthetase (SEPHS) # Marmoset
Target: KV389978.1:subseq(1127457,100827) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold552, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 1047
Query range: 0 -> 245
Target range: 49999 -> 50743
1 : MetAlaGluAlaLeuValThrGlyAlaCysGlyGlyThrMetValAlaMetAlaAlaAla : 20
||||||||||||! !!.!|||||||||||||||! !.!!|||!.!||||||!.!||||||
MetAlaGluAlaSerAlaThrGlyAlaCysGlyGluAlaMetAlaAlaMetValAlaAla
50000 : ATGGCGGAAGCCTCGGCGACTGGCGCCTGCGGGGAGGCGATGGCGGCGATGGTAGCTGCG : 50057
21 : Glu<-><-><->GlyProAlaCysLeuThrProGlyGlnArgIleSerAsnTyrTrpPro : 37
||| ||||||||| !!||||||! !|||!:!!.!.!!||||||||| !!|||
GluGlySerSerGlyProAlaGlyLeuThrLeuGlyArgAsnPheSerAsnTyrArgPro
50058 : GAAGGCTCCTCGGGCCCGGCGGGCTTGACTCTGGGCCGGAACTTCTCCAACTACCGGCCC : 50117
38 : LeuGluProGlnAlaLeuGlyLeuSerProAlaTrpArgLeuThrGlyPheSerGlyMet : 57
!!!|||||||||||||||||||||||||||::!|||||||||||||||||||||||||||
PheGluProGlnAlaLeuGlyLeuSerProSerTrpArgLeuThrGlyPheSerGlyMet
50118 : TTCGAGCCCCAGGCGTTGGGCCTCAGCCCGAGCTGGCGGCTGACGGGCTTCTCCGGCATG : 50177
58 : LysGlyUnkAspCysLysValProGlnGluThrLeuLeuLysLeuLeuAlaGlyLeuThr : 77
|||||| ! !||||||||||||||||||||||||||||||||||||||||||||||||
LysGly***GlyCysLysValProGlnGluThrLeuLeuLysLeuLeuAlaGlyLeuThr
50178 : AAGGGCTGAGGCTGCAAGGTCCCGCAGGAGACGCTGCTCAAACTCCTGGCGGGACTGACG : 50237
78 : GlyProAspValArgProLeuLeuSerArgGlyLeuValGlyGlyGlnGluGluValSer : 97
!!|||||||||||||||! !|||.!!|||||||||!.!|||!.!|||||||||!.!|||
ArgProAspValArgProProLeuGlyArgGlyLeuAlaGlyAlaGlnGluGluAlaSer
50238 : CGGCCGGACGTGCGGCCCCCACTGGGCCGGGGCCTGGCGGGCGCTCAGGAAGAGGCGTCG : 50297
98 : GlnGluThrGlyAlaGlyProSerProThrPheProAlaLeuGlyIleGlyMetAspSer : 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlnGluThrGlyAlaGlyProSerProThrPheProAlaLeuGlyIleGlyMetAspSer
50298 : CAGGAAACCGGAGCGGGCCCCAGCCCCACTTTTCCAGCCCTGGGCATCGGGATGGACTCC : 50357
118 : CysIleValAlaLeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspPhePheTyr : 137
|||:!!:!! !!||||||||||||||||||||||||||||||||||||||||||||||||
CysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspPhePheTyr
50358 : TGCGTCATCCCCCTGAGGCATGGGGGCCTGTCCCTGGTGCAGACCACGGACTTCTTTTAC : 50417
138 : ProLeuValGluAspProHisValMetGlyHisIleAlaCysAlaAsnMetLeuSerAsp : 157
||||||||||||||||||:!!:!!||||||!.!|||||||||||||||:!!|||||||||
ProLeuValGluAspProTyrMetMetGlyArgIleAlaCysAlaAsnValLeuSerAsp
50418 : CCCTTGGTGGAAGATCCCTACATGATGGGGCGCATAGCTTGTGCCAACGTGCTGAGTGAC : 50477
158 : LeuTyrAlaMetGlyLeuThrGluCysAspAsnMetLeuMetLeuLeuSerValSerGln : 177
|||||||||||||||:!!||||||||||||||||||||||||||||||||||||||||||
LeuTyrAlaMetGlyIleThrGluCysAspAsnMetLeuMetLeuLeuSerValSerGln
50478 : CTCTACGCCATGGGCATTACTGAGTGTGACAACATGTTGATGTTACTCAGCGTCAGCCAG : 50537
178 : SerMetSerGluGluGluHisGluLysValThrProLeuThrValLysGlyPheArgAsp : 197
||||||||||||||||||!.!||||||||||||||||||! !||||||||||||||||||
SerMetSerGluGluGluArgGluLysValThrProLeuMetValLysGlyPheArgAsp
50538 : AGTATGAGTGAGGAGGAGCGCGAAAAGGTAACGCCACTCATGGTCAAAGGCTTTCGGGAT : 50597
198 : AlaAlaGluGluGlyGlyThrAlaValThrGlyGlyGlnThrValLeuAsnProTrpIle : 217
|||||||||||||||||||||||||||||||||||||||||||||:!!||||||||||||
AlaAlaGluGluGlyGlyThrAlaValThrGlyGlyGlnThrValValAsnProTrpIle
50598 : GCGGCTGAGGAAGGAGGGACTGCAGTGACCGGTGGGCAAACTGTGGTCAACCCTTGGATT : 50657
218 : IleIleGlyGlyValAlaThrValValCysGlnProAsnGluPheIleMetProAspSer : 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IleIleGlyGlyValAlaThrValValCysGlnProAsnGluPheIleMetProAspSer
50658 : ATAATCGGTGGAGTTGCCACTGTGGTATGCCAGCCAAATGAATTCATAATGCCCGACAGC : 50717
238 : ValMetValGlyTyrValLeuVal : 245
!.!:!!|||||| !!|||||||||
AlaValValGlyAspValLeuVal
50718 : GCGGTGGTTGGGGATGTGTTGGTG : 50743
vulgar: SPP00000337_2.0 0 245 . KV389978.1:subseq(1127457,100827) 49999 50743 + 1047 M 21 63 G 0 9 M 224 672
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389978.1:subseq(1127457,100827) exonerate:protein2genome:local gene 50000 50743 1047 + . gene_id 1 ; sequence SPP00000337_2.0 ; gene_orientation .
KV389978.1:subseq(1127457,100827) exonerate:protein2genome:local cds 50000 50743 . + .
KV389978.1:subseq(1127457,100827) exonerate:protein2genome:local exon 50000 50743 . + . insertions 9 ; deletions 0
KV389978.1:subseq(1127457,100827) exonerate:protein2genome:local similarity 50000 50743 1047 + . alignment_id 1 ; Query SPP00000337_2.0 ; Align 50000 1 63 ; Align 50072 22 672
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000337_2.0 # Protein # Selenophosphate synthetase (SEPHS) # Marmoset
Target: KV389978.1:subseq(1127457,100827) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold552, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 173
Query range: 233 -> 279
Target range: 50689 -> 50827
234 : MetProAspSerValMetValGlyTyrValLeuValAsnGlyAspValLeuValLeuThr : 253
..!|||:!!..! !!!!::!! ! !! ! !||| !|||||||||||||||||||||
GlnProAsnGluPheIleMetProAspSerAlaValValGlyAspValLeuValLeuThr
50690 : CAGCCAAATGAATTCATAATGCCCGACAGCGCGGTGGTTGGGGATGTGTTGGTGTTAACC : 50747
254 : LysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAsnAsnProLysArg : 273
|||||||||||||||||||||||||||||||||||||||||||||:!!||||||:!!|||
LysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAsnProGluArg
50748 : AAACCGTTAGGAACTCAGGTTGCTGTCAATGCCCACCAATGGCTGGATAATCCTGAAAGA : 50807
274 : TrpAsnLysValLysMet : 279
||||||||||||||||||
TrpAsnLysValLysMet
50808 : TGGAATAAAGTAAAGATG : 50827
vulgar: SPP00000337_2.0 233 279 . KV389978.1:subseq(1127457,100827) 50689 50827 + 173 M 46 138
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389978.1:subseq(1127457,100827) exonerate:protein2genome:local gene 50690 50827 173 + . gene_id 2 ; sequence SPP00000337_2.0 ; gene_orientation .
KV389978.1:subseq(1127457,100827) exonerate:protein2genome:local cds 50690 50827 . + .
KV389978.1:subseq(1127457,100827) exonerate:protein2genome:local exon 50690 50827 . + . insertions 0 ; deletions 0
KV389978.1:subseq(1127457,100827) exonerate:protein2genome:local similarity 50690 50827 173 + . alignment_id 2 ; Query SPP00000337_2.0 ; Align 50690 234 138
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis