Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000313_2.0.fa -t ./SPP00000313_2.0/fastasubseq/KV389966.1_fastasubseq.fa]
Hostname: [ws101073u]
C4 Alignment:
------------
Query: SPP00000313_2.0 # Protein # Glutathione peroxidase 3 (GPx3) # Marmoset
Target: KV389966.1:subseq(685768,100182) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold540, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 991
Query range: 0 -> 189
Target range: 47478 -> 50182
1 : PheGlnValAspCysHisGlyGlyMetSerGlyThrIleTyrGluTyrGlyAlaLeuThr : 20
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PheGlnValAspCysHisGlyGlyMetSerGlyThrIleTyrGluTyrGlyAlaLeuThr
47479 : TTCCAGGTGGACTGCCATGGCGGCATGAGCGGCACCATTTATGAGTACGGAGCCCTCACC : 47536
21 : IleSerGlyGluGluTyrValProPheLysGlnPheAlaGlyLysTyrLeuLeuPheVal : 40
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IleSerGlyGluGluTyrValProPheLysGlnPheAlaGlyLysTyrLeuLeuPheVal
47537 : ATCAGTGGGGAGGAGTACGTCCCCTTCAAGCAGTTTGCTGGCAAATACCTCCTCTTTGTC : 47596
41 : AsnValAlaThrTyrUnkGlyLeuThrGlyGlnTyrIle{G} >>>> Target Intr : 54
|||||||||!:!||| |||||||||||||||||||||{|} 1398 bp
AsnValAlaSerTyr***GlyLeuThrGlyGlnTyrIle{G}++
47597 : AACGTAGCCAGCTACTGAGGCCTGACGGGCCAGTACATT{G}gt................ : 47641
55 : on 1 >>>> {lu}LeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyLeuValVal : 69
{||}|||||||||||||||||||||||||||||||||||||||||||||
++{lu}LeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyLeuValVal
47642 : .........ag{AA}CTGAATGCACTACAGGAAGAGCTTGCACCATTTGGTCTGGTCGTT : 49081
70 : LeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeu : 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeu
49082 : CTGGGCTTTCCCTGcaaccaatttggaaaacaggAACCAGGAGAGAACTCGGAGATCCTC : 49141
90 : ProSerLeu{Ly} >>>> Target Intron 2 >>>> {s}TyrValArgProGly : 98
|||||||||{||} 363 bp {|}|||||||||||||||
ProSerLeu{Ly}++ ++{s}TyrValArgProGly
49142 : CCCAGCCTC{AA}gt.........................ag{G}TATGTCCGACCAGGT : 49531
99 : GlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGlu : 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGlu
49532 : GGGGGCTTTGTCCCCAATTTCCAGCTGTTTGAGAAAGGGGATGTGAATGGAGAGAAAGAG : 49591
119 : GlnLysPheTyrThrPheLeuLys >>>> Target Intron 3 >>>> AsnSerC : 129
|||||||||||||||||||||||| 376 bp |||||||
GlnLysPheTyrThrPheLeuLys++ ++AsnSerC
49592 : CAGAAATTCTACACTTTCCTAAAGgt.........................agAACTcct : 50000
130 : ysProProThrSerGluLeuValGlyThrSerAspArgLeuPheTrpGluProMetLysV : 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ysProProThrSerGluLeuValGlyThrSerAspArgLeuPheTrpGluProMetLysV
50001 : gtcctcccacctcggaGCTCGTGGGTACATCTGACCGCCTCTTCTGGGAACCTATGAAGG : 50060
150 : alHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyIleProIleM : 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
alHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyIleProIleM
50061 : TCCATGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCCAGATGGTATACCCATTA : 50120
170 : etArgTrpHisHisArgThrThrValSerAsnValLysMetAspIleLeuLeuTyrMetA : 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
etArgTrpHisHisArgThrThrValSerAsnValLysMetAspIleLeuLeuTyrMetA
50121 : TGCGCTGGCACCACCGGACCACGGTCAGCAACGTTAAGATGGACATCCTGTTATACATGA : 50180
190 : rg : 189
||
rg
50181 : GG : 50182
vulgar: SPP00000313_2.0 0 189 . KV389966.1:subseq(685768,100182) 47478 50182 + 991 M 53 159 S 0 1 5 0 2 I 0 1394 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 359 3 0 2 S 1 1 M 33 99 5 0 2 I 0 372 3 0 2 M 63 189
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local gene 47479 50182 991 + . gene_id 1 ; sequence SPP00000313_2.0 ; gene_orientation +
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local cds 47479 47638 . + .
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local exon 47479 47638 . + . insertions 0 ; deletions 0
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local splice5 47639 47640 . + . intron_id 1 ; splice_site "GT"
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local intron 47639 49036 . + . intron_id 1
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local splice3 49035 49036 . + . intron_id 0 ; splice_site "AG"
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local cds 49037 49154 . + .
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local exon 49037 49154 . + . insertions 0 ; deletions 0
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local splice5 49155 49156 . + . intron_id 2 ; splice_site "GT"
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local intron 49155 49517 . + . intron_id 2
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local splice3 49516 49517 . + . intron_id 1 ; splice_site "AG"
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local cds 49518 49617 . + .
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local exon 49518 49617 . + . insertions 0 ; deletions 0
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local splice5 49618 49619 . + . intron_id 3 ; splice_site "GT"
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local intron 49618 49993 . + . intron_id 3
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local splice3 49992 49993 . + . intron_id 2 ; splice_site "AG"
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local cds 49994 50182 . + .
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local exon 49994 50182 . + . insertions 0 ; deletions 0
KV389966.1:subseq(685768,100182) exonerate:protein2genome:local similarity 47479 50182 991 + . alignment_id 1 ; Query SPP00000313_2.0 ; Align 47479 1 159 ; Align 49039 55 114 ; Align 49519 94 99 ; Align 49994 127 189
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis