Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000379_2.0.fa -t ./SPP00000379_2.0/fastasubseq/KV389883.1_fastasubseq.fa]
Hostname: [ws101073u]
C4 Alignment:
------------
Query: SPP00000379_2.0 # Protein # Eukaryotic elongation factor (eEFsec) # Marmoset
Target: KV389883.1:subseq(934747,100659) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold457, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 1387
Query range: 261 -> 537
Target range: 50659 -> 33142
262 : LysValValLysLysValLysSerMetGlnMetPheHisMetProIleThrSerAlaMet : 281
:!!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlnValValLysLysValLysSerMetGlnMetPheHisMetProIleThrSerAlaMet
50659 : CAGGTGGTGAAGAAGGTGAAGTCCATGCAGATGTTCCATATGCCCATCACTTCAGCCATG : 50602
282 : GlnGlyAspArgLeuGlyIleCysValThrGlnPheAspProLysLeuLeuGluArgGly : 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlnGlyAspArgLeuGlyIleCysValThrGlnPheAspProLysLeuLeuGluArgGly
50601 : CAAGGAGACCGGCTGGGCATCTGTGTCACCCAGTTTGACCCCAAGCTGCTGGAGCGCGGG : 50542
302 : LeuValCysAlaProGluSerLeuHisThrValHisAlaAlaLeuIleSerValGluLys : 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuValCysAlaProGluSerLeuHisThrValHisAlaAlaLeuIleSerValGluLys
50541 : TTGGTGTGTGCCCCTGAGTCCCTGCACACTGTCCACGCAGCCCTTATCTCTGTGGAAAAG : 50482
322 : IleProTyrPheArgGlyProLeuGlnThrLysAlaLysPheHisIleThrValGlyHis : 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IleProTyrPheArgGlyProLeuGlnThrLysAlaLysPheHisIleThrValGlyHis
50481 : ATACCATATTTTCGGGGGCCCCTGCAGACCAAGGCCAAGTTCCACATTACAGTGGGCCAT : 50422
342 : GluThrValMetGlyLysLeuMetPhePheThrProAlaProAspAsnPheAspGlnGlu : 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GluThrValMetGlyLysLeuMetPhePheThrProAlaProAspAsnPheAspGlnGlu
50421 : GAGACAGTCATGGGCAAGTTGATGTTCTTCACCCCTGCTCCAGATAACTTTGACCAGGAA : 50362
362 : ProIleLeuAspSerPheAspPheThrGlnGluTyrLeuPheGlnGluGlnTyrLeuTyr : 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||! !
ProIleLeuAspSerPheAspPheThrGlnGluTyrLeuPheGlnGluGlnTyrLeuCys
50361 : CCTATACTGGACTCCTTCGACTTCACTCAAGAATACCTCTTCCAGGAGCAGTACTTATGC : 50302
382 : LysAspLeuAlaSerAlaValThrAspAsnAspGluAlaAspLysLysAlaGlyGlnAla : 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LysAspLeuAlaSerAlaValThrAspAsnAspGluAlaAspLysLysAlaGlyGlnAla
50301 : AAGGATTTGGCATCAGCAGTGACAGACAATGATGAGGCCGACAAGAAGGCTGGCCAGGCC : 50242
402 : ThrGluGlyLeuCysProArgGlnGlnTrpAlaLeuValGluPheGluLysProValThr : 421
|||! !|||! !||||||||||||||||||||||||||||||||||||||||||||||||
ThrValGlyHisCysProArgGlnGlnTrpAlaLeuValGluPheGluLysProValThr
50241 : ACAGTGGGCCATTGCCCTCGGCAGCAGTGGGCCCTGGTGGAGTTTGAGAAGCCCGTCACC : 50182
422 : CysProArgLeuCysLeuValIleGlySerArgLeuAspAlaAspIleHisSerAsnThr : 441
|||||||||||||||||||||||||||||||||||||||||||||||||||:!!||||||
CysProArgLeuCysLeuValIleGlySerArgLeuAspAlaAspIleHisAlaAsnThr
50181 : TGTCCTCGGCTATGCCTGGTGATTGGCTCCAGGCTAGATGCGGACATTCATGCCAACACA : 50122
442 : CysArgLeuAlaPheHisGlyIleLeuLeuHisGlyLeuGluAspArgAsnTyrAlaAsp : 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CysArgLeuAlaPheHisGlyIleLeuLeuHisGlyLeuGluAspArgAsnTyrAlaAsp
50121 : TGCCGGCTGGCCTTCCATGGCATCCTGCTCCATGGGCTGGAGGACAGGAACTATGCCGAC : 50062
462 : SerPheLeuProArgLeuLysValTyrLysLeuLysHisLysHisGlyLeuValGluArg : 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SerPheLeuProArgLeuLysValTyrLysLeuLysHisLysHisGlyLeuValGluArg
50061 : AGCTTCCTGCCCAGGCTAAAGGTGTACAAGCTGAAGCACAAGCATGGCCTCGTGGAGCGG : 50002
482 : >>>> Target Intron 1 >>>> AlaMetAspAspTyrSerValIleGlyArgS : 492
16689 bp |||||||||||||||||||||||||||||||
++ ++AlaMetAspAspTyrSerValIleGlyArgS
50001 : gt.........................agGCAATGGATGACTACAGTGTGATCGGCCGCT : 33280
493 : erLeuPheLysLysGluThrAsnIleGlnLeuPheValGlyLeuLysValHisLeuSerT : 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
erLeuPheLysLysGluThrAsnIleGlnLeuPheValGlyLeuLysValHisLeuSerT
33279 : CCCTGTTCAAAAAGGAGACCAACATCCAGCTTTTTGTGGGGCTCAAGGTGCACCTGTCCA : 33220
513 : hrGlyGluLeuGlyIleIleAspSerAlaPheGlyGlnSerGlyLysPheLysIleHisI : 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
hrGlyGluLeuGlyIleIleAspSerAlaPheGlyGlnSerGlyLysPheLysIleHisI
33219 : CTGGGGAACTGGGCATCATCGACAGTGCCTTCGGCCAGAGCGGCAAGTTCAAGATCCACA : 33160
533 : leProGlyGlyLeuSer : 537
|||||||| !! !|||
leProGlyLysCysSer
33159 : TCCCAGGTAAGTGCAGC : 33143
vulgar: SPP00000379_2.0 261 537 . KV389883.1:subseq(934747,100659) 50659 33142 - 1387 M 220 660 5 0 2 I 0 16685 3 0 2 M 56 168
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389883.1:subseq(934747,100659) exonerate:protein2genome:local gene 33143 50659 1387 - . gene_id 1 ; sequence SPP00000379_2.0 ; gene_orientation +
KV389883.1:subseq(934747,100659) exonerate:protein2genome:local cds 50000 50659 . - .
KV389883.1:subseq(934747,100659) exonerate:protein2genome:local exon 50000 50659 . - . insertions 0 ; deletions 0
KV389883.1:subseq(934747,100659) exonerate:protein2genome:local splice5 49998 49999 . - . intron_id 1 ; splice_site "GT"
KV389883.1:subseq(934747,100659) exonerate:protein2genome:local intron 33311 49999 . - . intron_id 1
KV389883.1:subseq(934747,100659) exonerate:protein2genome:local splice3 33311 33312 . - . intron_id 0 ; splice_site "AG"
KV389883.1:subseq(934747,100659) exonerate:protein2genome:local cds 33143 33310 . - .
KV389883.1:subseq(934747,100659) exonerate:protein2genome:local exon 33143 33310 . - . insertions 0 ; deletions 0
KV389883.1:subseq(934747,100659) exonerate:protein2genome:local similarity 33143 50659 1387 - . alignment_id 1 ; Query SPP00000379_2.0 ; Align 50660 262 660 ; Align 33311 482 168
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis