Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000364_2.0.fa -t ./SPP00000364_2.0/fastasubseq/KV389832.1_fastasubseq.fa]
Hostname: [ws101092U]
C4 Alignment:
------------
Query: SPP00000364_2.0 # Protein # Methionine-R-sufoxide reductase 1 (MSRB1) # Marmoset
Target: KV389832.1:subseq(2795568,100344) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold406, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 553
Query range: 0 -> 115
Target range: 49999 -> 50344
1 : MetSerPheCysSerPhePheGlyGlyGluValPheGlnAsnHisPheGluProGlyIle : 20
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MetSerPheCysSerPhePheGlyGlyGluValPheGlnAsnHisPheGluProGlyIle
50000 : ATGTCGTTCTGCAGCTTCTTCGGGGGCGAAGTTTTCCAGAATCACTTTGAGCCGGGCATT : 50057
21 : TyrValCysAlaLysCysGlyTyrGluLeuPheSerSerArgSerLysTyrAlaHisSer : 40
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TyrValCysAlaLysCysGlyTyrGluLeuPheSerSerArgSerLysTyrAlaHisSer
50058 : TATGTGTGTGCCAAATGTGGCTATGAGCTGTTCTCCAGCCGCTCGAAGTATGCACACTCG : 50117
41 : SerProTrpProAlaPheThrGluThrIleHisAlaAspSerValAlaLysArgProGlu : 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SerProTrpProAlaPheThrGluThrIleHisAlaAspSerValAlaLysArgProGlu
50118 : TCCCCATGGCCAGCGTTCACTGAGACCATTCACGCCGACAGCGTGGCCAAGCGTCCGGAG : 50177
61 : ArgAsnArgProGluAlaLeuLysValSerCysGlyLysCysGlyAsnGlyLeuGlyHis : 80
!.!|||||| !!|||!.!|||||||||||| !!|||||||||||||||||||||||||||
HisAsnArgSerGluValLeuLysValSerSerGlyLysCysGlyAsnGlyLeuGlyHis
50178 : CACAATCGATCTGAAGTCTTGAAGGTGTCCAGTGGCAAGTGTGGCAACGGGTTGGGCCAT : 50237
81 : GluPheLeuAsnAspGlyProLysLeuGlyGlnSerArgPheUnkIlePheSerSerSer : 100
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
GluPheLeuAsnAspGlyProLysLeuGlyGlnSerArgPhe***IlePheSerSerSer
50238 : GAATTCCTGAACGACGGCCCCAAGCTGGGGCAGTCCCGATTCTGAATATTCAGCAGCTCC : 50297
101 : LeuLysPheIleProLysGlyGluLeuAlaLeuHisSerTrpGly : 115
|||||||||:!!|||||||||:!! !.!!! ! ||| !|||
LeuLysPheValProLysGlyLysGluThrSerAlaSerGlnGly
50298 : CTGAAGTTTGTCCCTAAAGGCAAAGAAACTTCTGCATCCCAGGGG : 50344
vulgar: SPP00000364_2.0 0 115 . KV389832.1:subseq(2795568,100344) 49999 50344 + 553 M 115 345
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389832.1:subseq(2795568,100344) exonerate:protein2genome:local gene 50000 50344 553 + . gene_id 1 ; sequence SPP00000364_2.0 ; gene_orientation .
KV389832.1:subseq(2795568,100344) exonerate:protein2genome:local cds 50000 50344 . + .
KV389832.1:subseq(2795568,100344) exonerate:protein2genome:local exon 50000 50344 . + . insertions 0 ; deletions 0
KV389832.1:subseq(2795568,100344) exonerate:protein2genome:local similarity 50000 50344 553 + . alignment_id 1 ; Query SPP00000364_2.0 ; Align 50000 1 345
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis