Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000310_2.0.fa -t ./SPP00000310_2.0/fastasubseq/KV389771.1_fastasubseq.fa]
Hostname: [ws101072u]
C4 Alignment:
------------
Query: SPP00000310_2.0 # Protein # Iodothyronine deiodinase 2 (DIO2) # Marmoset
Target: KV389771.1:subseq(1034201,100581) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold345, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 1336
Query range: 0 -> 265
Target range: 58685 -> 49999
1 : MetGlyIleLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheSer : 20
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MetGlyIleLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheSer
58685 : atGGGCATCCTCAGCGTAGACTTGCTGATCACACTGCAAATTCTGCCAGTTTTTTTCTCC : 58628
21 : AsnCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValValLeuLeu : 40
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AsnCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValValLeuLeu
58627 : AACTGCCTCTTCCTGGCGCTCTATGACTCGGTCATTCTGCTCAAGCACGTGGTGCTGCTG : 58568
41 : LeuSerArgSerLysSerThrArgGlyGluTrpArgArgMetLeuThrSerGluGlyLeu : 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuSerArgSerLysSerThrArgGlyGluTrpArgArgMetLeuThrSerGluGlyLeu
58567 : CTGAGCCGCTCCAAGTCCACTCGCGGAGAGTGGCGGCGCATGCTGACCTCAGAGGGACTG : 58508
61 : ArgCysValTrpLysSerPheLeuLeuAspAlaTyrLysGln >>>> Target Intr : 75
|||||||||||||||||||||||||||||||||||||||||| 7891 bp
ArgCysValTrpLysSerPheLeuLeuAspAlaTyrLysGln++
58507 : CGCTGCGTCTGGAAGAGCTTCCTCCTCGATGCCTACAAACAGgt................ : 58461
76 : on 1 >>>> ValLysLeuGlyGluAspAlaProAsnSerSerValValHisValSerG : 91
|||||||||||||||||||||||||||||||||||||||||||||||||
++ValLysLeuGlyGluAspAlaProAsnSerSerValValHisValSerG
58460 : .........agGTGAAATTGGGTGAGGATGCCCCCAATTCCAGTGTGGTGCATGTCTCCG : 50524
92 : lyAlaGluGlyGlyAspAspSerGlyAsnGlyThrGlnGluLysIleAlaGluGlyAlaA : 111
|||||||||||||||||:!!|||||||||||| !!|||||||||||||||||||||||||
lyAlaGluGlyGlyAspAsnSerGlyAsnGlyProGlnGluLysIleAlaGluGlyAlaA
50523 : GTGCAGAAGGAGGTGACAACAGTGGCAATGGTCCCCAGGAGAAGATAGCTGAGGGAGCCG : 50464
112 : laCysHisLeuLeuAspPheAlaSerProGluArgProLeuValValAsnPheGlySerA : 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
laCysHisLeuLeuAspPheAlaSerProGluArgProLeuValValAsnPheGlySerA
50463 : CATGTCACCTTCTTGACTTTGCCAGCCCTGAGCGCCCACTGGTGGTCAACTTTGGCTCAG : 50404
132 : laThrUnkProProPheThrSerGlnLeuProAlaPheCysLysLeuValGluGluPheS : 151
||||| |||||||||||||||||||||||||||||| !!|||||||||||||||||||
laThr***ProProPheThrSerGlnLeuProAlaPheArgLysLeuValGluGluPheS
50403 : CTACTTGACCTCCTTTCACGAGCCAGCTGCCAGCCTTCCGCAAACTGGTGGAAGAGTTCT : 50344
152 : erSerValAlaAspPheLeuLeuValTyrIleAspGluAlaHisProSerAspGlyTrpA : 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
erSerValAlaAspPheLeuLeuValTyrIleAspGluAlaHisProSerAspGlyTrpA
50343 : CCTCAGTGGCTGACTTCCTGCTGGTCTACATTGATGAGGCTCATCCGTCAGATGGCTGGG : 50284
172 : laIleProGlyAspSerSerTrpSerPheGluValLysLysHisGlnAsnGlnGluAspA : 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
laIleProGlyAspSerSerTrpSerPheGluValLysLysHisGlnAsnGlnGluAspA
50283 : CGATACCTGGGGACTCCTCTTGGTCTTTCGAGGTGAAGAAGCACCAGAACCAGGAAGATC : 50224
192 : rgCysAlaAlaAlaGlnLysLeuLeuGluArgPheSerLeuProProGlnCysArgValV : 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rgCysAlaAlaAlaGlnLysLeuLeuGluArgPheSerLeuProProGlnCysArgValV
50223 : GATGTGCAGCAGCCCAGAAGCTTCTGGAGCGTTTCTCCTTGCCGCCCCAGTGCCGAGTTG : 50164
212 : alAlaAspArgMetAspAsnAsnAlaAsnValAlaTyrGlyValAlaPheGluArgValC : 231
|||||||| !!|||||||||||||||||||||||||||||||||||||||||||||||||
alAlaAspCysMetAspAsnAsnAlaAsnValAlaTyrGlyValAlaPheGluArgValC
50163 : TGGCTGACTGCATGGACAATAATGCCAACGTAGCTTACGGGGTAGCCTTTGAACGTGTGT : 50104
232 : ysIleValGlnArgGlnLysIleAlaTyrLeuGlyGlyLysGlyProPheSerTyrAsnL : 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ysIleValGlnArgGlnLysIleAlaTyrLeuGlyGlyLysGlyProPheSerTyrAsnL
50103 : GCATTGTGCAGAGACAGAAAATTGCTTATCTGGGAGGAAAGGGCCCCTTCTCCTACAACC : 50044
252 : euGlnGluValArgHisTrpLeuGluLysAsnValSerLysArg : 265
|||||||||||||||||||||||||||||||| !!|||||||||
euGlnGluValArgHisTrpLeuGluLysAsnPheSerLysArg
50043 : TTCAAGAAGTCCGGCATTGGCTGGAGAAGAATTTCAGcaagaga : 50000
vulgar: SPP00000310_2.0 0 265 . KV389771.1:subseq(1034201,100581) 58685 49999 - 1336 M 74 222 5 0 2 I 0 7887 3 0 2 M 191 573
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389771.1:subseq(1034201,100581) exonerate:protein2genome:local gene 50000 58685 1336 - . gene_id 1 ; sequence SPP00000310_2.0 ; gene_orientation +
KV389771.1:subseq(1034201,100581) exonerate:protein2genome:local cds 58464 58685 . - .
KV389771.1:subseq(1034201,100581) exonerate:protein2genome:local exon 58464 58685 . - . insertions 0 ; deletions 0
KV389771.1:subseq(1034201,100581) exonerate:protein2genome:local splice5 58462 58463 . - . intron_id 1 ; splice_site "GT"
KV389771.1:subseq(1034201,100581) exonerate:protein2genome:local intron 50573 58463 . - . intron_id 1
KV389771.1:subseq(1034201,100581) exonerate:protein2genome:local splice3 50573 50574 . - . intron_id 0 ; splice_site "AG"
KV389771.1:subseq(1034201,100581) exonerate:protein2genome:local cds 50000 50572 . - .
KV389771.1:subseq(1034201,100581) exonerate:protein2genome:local exon 50000 50572 . - . insertions 0 ; deletions 0
KV389771.1:subseq(1034201,100581) exonerate:protein2genome:local similarity 50000 58685 1336 - . alignment_id 1 ; Query SPP00000310_2.0 ; Align 58686 1 222 ; Align 50573 75 573
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis