Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000029_1.0.fa -t ./SPP00000029_1.0/fastasubseq/KV389732.1_fastasubseq.fa]
Hostname: [ws101072u]
C4 Alignment:
------------
Query: SPP00000029_1.0 # Protein # Selenoprotein V (SelV) # Homo sapiens # Complete
Target: KV389732.1:subseq(2043714,100413) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold306, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 1052
Query range: 0 -> 346
Target range: 49564 -> 52830
1 : MetAsnAsnGlnAlaArgThrProAlaProSerSerAlaArgThrSerThrSerValArg : 20
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MetAsnAsnGlnAlaArgThrProAlaProSerSerAlaArgThrSerThrSerValArg
49565 : ATGAATAACCAGGCGCGGACCCCCGCCCCCTCCTCTGCCCGGACCTCAACGTCGGTCCGA : 49622
21 : AlaSerThrProThrArgThrProThrProLeuArgThrProThrProValArgThrArg : 40
||||||||||||||||||||||||||||||:!!|||||||||||| !!||||||||||||
AlaSerThrProThrArgThrProThrProValArgThrProThrAlaValArgThrArg
49623 : GCTTCTACCCCGACCCGGACACCGACTCCGGTCCGGACTCCGACCGCGGTCCGGACTCGG : 49682
41 : ThrProIleArgThrLeuThrProValLeuThrProSerProAlaGlyThrSerProLeu : 60
|||||||||||||||||||||||| !||| ||||||||| !! !!|||
ThrProIleArgThrLeuThrProSerLeu------------AlaGlyThrProAlaLeu
49683 : ACCCCCATCCGGACCCTGACCCCCTCTCTG------------GCCGGGACTCCCGCTCTG : 49730
61 : ValLeuThrProAlaProAlaGlnIleProThrLeuValProThrProAlaLeuAlaArg : 80
|||! !||| !!.!!||||||!:!||| !! !||||||||||||||||||! !||| !!
ValProThrThrThrProAlaArgIleSerArgLeuValProThrProAlaProAlaTrp
49731 : GTCCCGACTACCACTCCGGCCCGGATCTCCCGTCTGGTCCCGACTCCGGCTCCGGCCTGG : 49790
81 : IleProArgLeuValProProProAlaProAlaTrpIleProThrProValProThrPro : 100
! ! !!! !! !|||||| !!|||.!!|||||| !!! !|||||||||:!!||||||! !
ThrSerThrProValProThrProThrProAlaArgThrProThrProIleProThrLeu
49791 : ACCTCCACTCCAGTCCCGACTCCTACTCCCGCCCGGACCCCAACTCCGATCCCGACTCTG : 49850
101 : ValProValArgAsnProThrProValProThrProAlaArgThrLeuThrProProVal : 120
|||! !..!! !!.!|||..!! !:!!|||.!!||||||||| :!! !! !!||||||
ValArgThrLeuThrProValArgLeuProAlaProAlaArg---IleProAlaProVal
49851 : GTTCGGACCCTGACTCCAGTCCGGCTTCCAGCCCCCGCCCGG---ATACCGGCCCCGgtc : 49907
121 : ArgValProAlaProAlaProAlaGln >>>> Target Intron 1 >>>> LeuL : 131
...|||||||||...|||!.!! ! 54 bp :!!|
ProAlaProAlaProValProValPro++ -+ValL
49908 : ccggccccggccccggtcCCGGTCCCGgt.........................tgGTCC : 49994
132 : euAlaGlyIleArgAlaAlaLeuProValLeuAspSerTyrLeuAlaProAlaLeuProL : 151
|||||||||||||||||.!!|||||||||||||||||||||! !||| !!|||||||||!
euAlaGlyIleArgAlaThrLeuProValLeuAspSerTyrProAlaSerAlaLeuProT
49995 : TGGCCGGGATTCGGGCCACGCTCCCCGTCTTGGACTCCTACCCGGCCTCGGCCCTACCTT : 50054
152 : euAspProProProGluProAlaProGlu<-><->LeuProLeuLeuProGluGluAspP : 169
!||||||||||||||||||||||||||| :!! !!:!!! ! !!|||||||||!
rpAspProProProGluProAlaProGluProArgValSerValSerSerGluGluAspA
50055 : GGGATCCGCCCCCGGAACCTGCCCCGGAGCCGCGCGTGTCAGTGTCATCCGAGGAGGATC : 50114
170 : roGluProAlaProSerLeuLysLeuIleProSerValSerSerGluAlaGlyProAlaP : 189
!||||||||||||||||||!:!|||:!!||||||||||||.!!|||.!!|||||||||
rgGluProAlaProSerLeuArgLeuValProSerValSerGlyGluThrGlyProAlaA
50115 : GTGAGCCGGCGCCGAGCCTGAGGCTCGTCCCGTCGGTCTCCGGCGAGACTGGGCCCGCCG : 50174
190 : roGlyProLeuProThrArgThrProLeuAlaAlaAsnSerProGlyProThrLeuAspP : 209
!!||||||! !|||.!!!.!||||||||||||.!!||| !!|||||||||||||||||||
laGlyProProProAlaHisThrProLeuAlaThrAsnProProGlyProThrLeuAspP
50175 : CGGGGCCCCCTCCCGCGCACACTCCGCTGGCCACGAACCCACCCGGGCCCACGCTGGACT : 50234
210 : heThrPheArgAlaAspProSerAlaIleGlyLeuAlaAspProProIleProSerProV : 229
||||| |||||| !!||||||! !||||||||||||||| !!||||||||| !!|
heThr------AlaAspSerSerAlaThrGlyLeuAlaAspProThrIleProSerSerV
50235 : TCACC------GCAGACTCGTCGGCCACTGGGCTGGCGGATCCCACCATTCCCAGCTCTG : 50288
230 : alProSerProIleLeuGlyThrIleProSerAlaIleSerLeuGlnAsnCysThrGluT : 249
|||||:!!||||||||||||||||||||||||||| !||||||! !|||! !||||||!
alProAlaProIleLeuGlyThrIleProSerAlaAlaSerLeuLeuAsnSerThrGluS
50289 : TCCCTGCGCCCATCCTGGGGACTATCCCGTCGGCCGCCTCCTTACTGAATTCTACCGAAA : 50348
250 : hrPheProSerSerSerGluAsnPheAlaLeuAspLysArgValLeuIleArgValThrT : 269
:!||| !|||:!!||||||!:!|||||||||||||||||||||! !|||||||||||||
erPheValSerAlaSerGluSerPheAlaLeuAspLysArgValProIleArgValThrT
50349 : GCTTCGTCTCAGCCAGTGAGAGCTTCGCGCTGGACAAGAGGGTCCCTATTCGAGTGACCT : 50408
270 : yr{Cy} >>>> Target Intron 2 >>>> {s}GlyLeuUnkSerTyrSerLeuA : 278
||{||} 2011 bp {|} ! ! !!:!:!!! !!
yr{Cy}++ --{s}HisAspProValPheAlaProG
50409 : AC{TG}gt.........................cc{C}CATGACCCCGTCTTTGCCCCTC : 52446
279 : rgTyrIleLeuLeuLysLysSerLeuGluGlnGlnPheProAsnHisLeuLeuPhe >> : 297
:!||||||||||||||||||||||||||||||!:!||||||:!!!.!|||||||||
lnTyrIleLeuLeuLysLysSerLeuGluGlnArgPheProAspArgLeuLeuPhe++
52447 : AGTACATTCTACTGAAAAAGAGCCTGGAGCAGCGATTTCCAGATCGCCTACTCTTTgt.. : 52505
298 : >> Target Intron 3 >>>> GluGluAspArgAlaAlaGlnAlaThrGlyGluPh : 308
85 bp ||||||||||||||||||||||||||||||!!:||
++GluGluAspArgAlaAlaGlnAlaThrGlyAspPh
52506 : .......................agGAGGAGGACAGAGCTGCCCAGGCTACAGGGGATTT : 52621
309 : eGluValPheValAsnGlyArgLeuValHisSerLysLys >>>> Target Intron : 322
|||||||||||||:!!|||||||||||||||||||||||| 93 bp
eGluValPheValAspGlyArgLeuValHisSerLysLys++
52622 : TGAAGTGTTTGTAGATGGGAGACTGGTCCATTCCAAGAAGgt.................. : 52665
323 : 4 >>>> ArgGlyAspGlyPheValAsnGluSerArgLeuGlnLysIleValSerVal : 338
||||||||||||||||||:!!|||:!!!:!||||||||||||||||||:!!
++ArgGlyAspGlyPheValAspGluAlaLysLeuGlnLysIleValSerIle
52666 : .......agAGGGGTGATGGCTTTGTGGATGAGGCCAAGCTGCAGAAAATTGTGAGCATT : 52804
339 : IleAspGluGluIleLysLysArg : 346
||||||||||||||||||||||||
IleAspGluGluIleLysLysArg
52805 : ATTGATGAGGAGATCAAGAAGAGG : 52830
vulgar: SPP00000029_1.0 0 346 . KV389732.1:subseq(2043714,100413) 49564 52830 + 1052 M 50 150 G 4 0 M 60 180 G 1 0 M 14 42 5 0 2 I 0 50 3 0 2 M 31 93 G 0 6 M 50 150 G 2 0 M 57 171 S 0 2 5 0 2 I 0 2007 3 0 2 S 1 1 M 26 78 5 0 2 I 0 81 3 0 2 M 25 75 5 0 2 I 0 89 3 0 2 M 25 75
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local gene 49565 52830 1052 + . gene_id 1 ; sequence SPP00000029_1.0 ; gene_orientation +
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local cds 49565 49936 . + .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local exon 49565 49936 . + . insertions 0 ; deletions 5
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local splice5 49937 49938 . + . intron_id 1 ; splice_site "GT"
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local intron 49937 49990 . + . intron_id 1
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local splice3 49989 49990 . + . intron_id 0 ; splice_site "TG"
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local cds 49991 50412 . + .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local exon 49991 50412 . + . insertions 6 ; deletions 2
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local splice5 50413 50414 . + . intron_id 2 ; splice_site "GT"
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local intron 50413 52423 . + . intron_id 2
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local splice3 52422 52423 . + . intron_id 1 ; splice_site "CC"
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local cds 52424 52502 . + .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local exon 52424 52502 . + . insertions 0 ; deletions 0
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local splice5 52503 52504 . + . intron_id 3 ; splice_site "GT"
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local intron 52503 52587 . + . intron_id 3
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local splice3 52586 52587 . + . intron_id 2 ; splice_site "AG"
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local cds 52588 52662 . + .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local exon 52588 52662 . + . insertions 0 ; deletions 0
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local splice5 52663 52664 . + . intron_id 4 ; splice_site "GT"
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local intron 52663 52755 . + . intron_id 4
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local splice3 52754 52755 . + . intron_id 3 ; splice_site "AG"
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local cds 52756 52830 . + .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local exon 52756 52830 . + . insertions 0 ; deletions 0
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local similarity 49565 52830 1052 + . alignment_id 1 ; Query SPP00000029_1.0 ; Align 49565 1 150 ; Align 49715 55 180 ; Align 49895 116 42 ; Align 49991 130 93 ; Align 50090 161 150 ; Align 50240 213 171 ; Align 52425 271 78 ; Align 52588 297 75 ; Align 52756 322 75
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000029_1.0 # Protein # Selenoprotein V (SelV) # Homo sapiens # Complete
Target: KV389732.1:subseq(2043714,100413) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold306, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 272
Query range: 17 -> 140
Target range: 49561 -> 49933
18 : SerValArgAlaSerThrProThrArgThrProThrProLeuArgThrProThrProVal : 37
|||:!!!.! !..!.!!! !|||! !.!!|||:!! !! !|||||| !!||| !!|||
SerMetAsnAsnGlnAlaArgThrProAlaProSerSerAlaArgThrSerThrSerVal
49562 : TCCATGAATAACCAGGCGCGGACCCCCGCCCCCTCCTCTGCCCGGACCTCAACGTCGGTC : 49619
38 : ArgThrArgThrProIleArgThrLeuThrProValLeuThrProSerProAlaGlyThr : 57
|||.!! !||||||! !||||||! !|||||||||! !||||||!!! !!!.! !!|||
ArgAlaSerThrProThrArgThrProThrProValArgThrProThrAlaValArgThr
49620 : CGAGCTTCTACCCCGACCCGGACACCGACTCCGGTCCGGACTCCGACCGCGGTCCGGACT : 49679
58 : <->SerProLeu<->ValLeuThrProAlaProAlaGlnIleProThrLeuValProThr : 75
!!!|||:!! ..!|||||||||:!!! !||| !! !|||.!!||||||||||||
ArgThrProIleArgThrLeuThrProSerLeuAlaGlyThrProAlaLeuValProThr
49680 : CGGACCCCCATCCGGACCCTGACCCCCTCTCTGGCCGGGACTCCCGCTCTGGTCCCGACT : 49739
76 : ProAlaLeuAlaArgIleProArgLeuValProProProAlaProAlaTrpIleProThr : 95
!!.!!! !||||||||| !!|||||||||||| !!|||||||||||||||! ! !!|||
ThrThrProAlaArgIleSerArgLeuValProThrProAlaProAlaTrpThrSerThr
49740 : ACCACTCCGGCCCGGATCTCCCGTCTGGTCCCGACTCCGGCTCCGGCCTGGACCTCCACT : 49799
96 : ProValProThrProValProValArgAsnProThrProValProThrProAlaArgThr : 115
|||||||||||||||..!|||!.!|||!.!|||||||||:!!||||||! !!.!||||||
ProValProThrProThrProAlaArgThrProThrProIleProThrLeuValArgThr
49800 : CCAGTCCCGACTCCTACTCCCGCCCGGACCCCAACTCCGATCCCGACTCTGGTTCGGACC : 49859
116 : LeuThrProProValArgValProAlaProAlaProAlaGlnLeuLeuAlaGlyIleArg : 135
|||||| |||||||||:!!||||||||||||! ! !! ! !! !...
LeuThr---ProValArgLeuProAlaProAlaArgIleProAlaProValProAlaPro
49860 : CTGACT---CCAGTCCGGCTTCCAGCCCCCGCCCGGATACCGGCCCCGgtcccggccccg : 49916
136 : AlaAlaLeuProVal : 140
||| :::||||||
AlaProValProVal
49917 : gccccggtcCCGGTC : 49933
vulgar: SPP00000029_1.0 17 140 . KV389732.1:subseq(2043714,100413) 49561 49933 + 272 M 40 120 G 0 3 M 3 9 G 0 3 M 57 171 G 1 0 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local gene 49562 49933 272 + . gene_id 2 ; sequence SPP00000029_1.0 ; gene_orientation .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local cds 49562 49933 . + .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local exon 49562 49933 . + . insertions 6 ; deletions 1
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local similarity 49562 49933 272 + . alignment_id 2 ; Query SPP00000029_1.0 ; Align 49562 18 120 ; Align 49685 58 9 ; Align 49697 61 171 ; Align 49868 119 66
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000029_1.0 # Protein # Selenoprotein V (SelV) # Homo sapiens # Complete
Target: KV389732.1:subseq(2043714,100413) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold306, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 153
Query range: 32 -> 159
Target range: 49588 -> 49966
33 : ThrProThrProValArgThrArgThrProIleArgThrLeuThrProValLeuThrPro : 52
.!!|||:!! !!!.!|||||| !||| !!:!!|||.!!! !||||||..!! !||||||
AlaProSerSerAlaArgThrSerThrSerValArgAlaSerThrProThrArgThrPro
49589 : GCCCCCTCCTCTGCCCGGACCTCAACGTCGGTCCGAGCTTCTACCCCGACCCGGACACCG : 49646
53 : SerProAlaGlyThrSerProLeuValLeuThrProAlaProAlaGlnIleProThrLeu : 72
!!!|||!.! !!||| !! !! !|||! !|||! !.!!||| |||! !||||||
ThrProValArgThrProThrAlaValArgThrArgThrPro------IleArgThrLeu
49647 : ACTCCGGTCCGGACTCCGACCGCGGTCCGGACTCGGACCCCC------ATCCGGACCCTG : 49700
73 : ValProThrProAlaLeuAlaArgIleProArgLeuValProProProAlaProAlaTrp : 92
||||||:!!|||||| !!! !||| !||||||||| !! !!.!!|||||| !!
------ThrProSerLeuAlaGlyThrProAlaLeuValProThrThrThrProAlaArg
49701 : ------ACCCCCTCTCTGGCCGGGACTCCCGCTCTGGTCCCGACTACCACTCCGGCCCGG : 49754
93 : IleProThrProValProThrProValPro<-><->ValArgAsnProThrProValPro : 110
||| !! !! !||||||||||||!.!||| ..! !!.!|||..!|||..!|||
IleSerArgLeuValProThrProAlaProAlaTrpThrSerThrProValProThrPro
49755 : ATCTCCCGTCTGGTCCCGACTCCGGCTCCGGCCTGGACCTCCACTCCAGTCCCGACTCCT : 49814
111 : ThrProAlaArgThrLeuThrPro<->ProValArgValProAlaProAlaProAlaGln : 129
|||||||||||||||! !|||||| |||..!! !|||! !.!!! !.!!|||!.!!:!
ThrProAlaArgThrProThrProIleProThrLeuValArgThrLeuThrProValArg
49815 : ACTCCCGCCCGGACCCCAACTCCGATCCCGACTCTGGTTCGGACCCTGACTCCAGTCCGG : 49874
130 : LeuLeuAlaGlyIleArgAlaAlaLeuProValLeuAspSerTyrLeuAlaProAlaLeu : 149
|||! !||| ! !||| ! !! !|||||| ...|||!.!! !
LeuProAlaProAlaArgIleProAlaProValProAlaProAlaProValProValPro
49875 : CTTCCAGCCCCCGCCCGGATACCGGCCCCGgtcccggccccggccccggtcCCGGTCCCG : 49934
150 : ProLeuAspProProProGluProAlaPro : 159
!! !! !||| !!|||! |||||||||
ValProValProAlaProValProAlaPro
49935 : GTCCCGGTCCCAGCCCCCGTCCCGGCCCCG : 49966
vulgar: SPP00000029_1.0 32 159 . KV389732.1:subseq(2043714,100413) 49588 49966 + 153 M 34 102 G 2 0 M 4 12 G 2 0 M 28 84 G 0 6 M 16 48 G 0 3 M 41 123
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local gene 49589 49966 153 + . gene_id 3 ; sequence SPP00000029_1.0 ; gene_orientation .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local cds 49589 49966 . + .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local exon 49589 49966 . + . insertions 9 ; deletions 4
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local similarity 49589 49966 153 + . alignment_id 3 ; Query SPP00000029_1.0 ; Align 49589 33 102 ; Align 49691 69 12 ; Align 49703 75 84 ; Align 49793 103 48 ; Align 49844 119 123
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000029_1.0 # Protein # Selenoprotein V (SelV) # Homo sapiens # Complete
Target: KV389732.1:subseq(2043714,100413) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold306, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 128
Query range: 72 -> 207
Target range: 49582 -> 49990
73 : ValProThrProAlaLeuAlaArgIleProArgLeuValProProProAlaProAlaTrp : 92
..!|||.!!|||:!!! !||||||! ! !!! !! !|||! ! !! !!.!!|||.!! !!
ThrProAlaProSerSerAlaArgThrSerThrSerValArgAlaSerThrProThrArg
49583 : ACCCCCGCCCCCTCCTCTGCCCGGACCTCAACGTCGGTCCGAGCTTCTACCCCGACCCGG : 49640
93 : IleProThrProValProThrProValProValArgAsnProThrProValProThrPro : 112
! !||||||||||||! !||||||..! !!||||||!.!! !||||||:!!! !|||! !
ThrProThrProValArgThrProThrAlaValArgThrArgThrProIleArgThrLeu
49641 : ACACCGACTCCGGTCCGGACTCCGACCGCGGTCCGGACTCGGACCCCCATCCGGACCCTG : 49700
113 : AlaArgThrLeuThr<->ProProValArgValProAlaProAlaProAlaGlnLeuLeu : 131
.!!! !:!!|||.!! !!|||!.!! !||||||.!! !!.!!||||||!:!:!!! !
ThrProSerLeuAlaGlyThrProAlaLeuValProThrThrThrProAlaArgIleSer
49701 : ACCCCCTCTCTGGCCGGGACTCCCGCTCTGGTCCCGACTACCACTCCGGCCCGGATCTCC : 49760
132 : AlaGlyIleArgAlaAlaLeuProValLeuAspSerTyrLeuAlaProAlaLeuProLeu : 151
! !:!!! !.!! !! !|||!.!! ! !||| !! !!.!|||.!!! ! !!! !
ArgLeuValProThrProAlaProAlaTrpThrSerThrProValProThrProThrPro
49761 : CGTCTGGTCCCGACTCCGGCTCCGGCCTGGACCTCCACTCCAGTCCCGACTCCTACTCCC : 49820
152 : AspProProProGluProAlaProGluLeuProLeuLeuProGluGluAspProGluPro : 171
! !! ! !!||| ||| !||| ||| !! ! !! ! !! !! ! |||
AlaArgThrProThrProIleProThrLeuValArgThrLeuThrProValArgLeuPro
49821 : GCCCGGACCCCAACTCCGATCCCGACTCTGGTTCGGACCCTGACTCCAGTCCGGCTTCCA : 49880
172 : AlaProSerLeuLysLeuIleProSerValSerSerGluAlaGlyProAlaProGlyPro : 191
||||||:!!! !! !! ! !||| ::: |||!.!|||! !|||
AlaProAlaArgIleProAlaProValProAlaProAlaProValProValProValPro
49881 : GCCCCCGCCCGGATACCGGCCCCGgtcccggccccggccccggtcCCGGTCCCGGTCCCG : 49940
192 : LeuProThrArgThrProLeuAlaAlaAsnSerProGlyProThrLeu : 207
:!!|||.!!! !..!||| ! !!||| :!!! !..!|||.!!|||
ValProAlaProValProAlaProAlaLeuAlaLeuSerProAlaLeu
49941 : GTCCCAGCCCCCGTCCCGGCCCCGGCCCTGGCCCTATCCCCAGCTCTG : 49990
vulgar: SPP00000029_1.0 72 207 . KV389732.1:subseq(2043714,100413) 49582 49990 + 128 M 45 135 G 0 3 M 90 270
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local gene 49583 49990 128 + . gene_id 4 ; sequence SPP00000029_1.0 ; gene_orientation .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local cds 49583 49990 . + .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local exon 49583 49990 . + . insertions 3 ; deletions 0
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local similarity 49583 49990 128 + . alignment_id 4 ; Query SPP00000029_1.0 ; Align 49583 73 135 ; Align 49721 118 270
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000029_1.0 # Protein # Selenoprotein V (SelV) # Homo sapiens # Complete
Target: KV389732.1:subseq(2043714,100413) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold306, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 113
Query range: 16 -> 55
Target range: 49594 -> 49711
17 : ThrSerValArgAlaSerThrProThrArgThrProThrProLeuArgThrProThrPro : 36
:!!|||!.!|||.!!|||||| !!..!|||.!! !!|||||| !|||||||||||||||
SerSerAlaArgThrSerThrSerValArgAlaSerThrProThrArgThrProThrPro
49595 : TCCTCTGCCCGGACCTCAACGTCGGTCCGAGCTTCTACCCCGACCCGGACACCGACTCCG : 49652
37 : ValArgThrArgThrProIleArgThrLeuThrProValLeuThrProSerProAla : 55
|||||||||! !||| !!:!!||||||! !||||||:!!! !|||! !!!!|||:!!
ValArgThrProThrAlaValArgThrArgThrProIleArgThrLeuThrProSer
49653 : GTCCGGACTCCGACCGCGGTCCGGACTCGGACCCCCATCCGGACCCTGACCCCCTCT : 49711
vulgar: SPP00000029_1.0 16 55 . KV389732.1:subseq(2043714,100413) 49594 49711 + 113 M 39 117
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local gene 49595 49711 113 + . gene_id 5 ; sequence SPP00000029_1.0 ; gene_orientation .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local cds 49595 49711 . + .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local exon 49595 49711 . + . insertions 0 ; deletions 0
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local similarity 49595 49711 113 + . alignment_id 5 ; Query SPP00000029_1.0 ; Align 49595 17 117
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000029_1.0 # Protein # Selenoprotein V (SelV) # Homo sapiens # Complete
Target: KV389732.1:subseq(2043714,100413) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold306, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 104
Query range: 93 -> 205
Target range: 49591 -> 49924
94 : ProThrProValProThrProValProValArgAsnProThrProValProThrProAla : 113
|||:!! !!!.!! !||| !!..! !!|||||| ! !!||||||..!! !||||||.!!
ProSerSerAlaArgThrSerThrSerValArgAlaSerThrProThrArgThrProThr
49592 : CCCTCCTCTGCCCGGACCTCAACGTCGGTCCGAGCTTCTACCCCGACCCGGACACCGACT : 49649
114 : ArgThrLeuThrProProValArgValProAlaProAlaProAlaGlnLeuLeuAlaGly : 133
! !..!! !||| |||..! !|||! !.!!! !.!!||| !!:! !|||.!! !
ProValArgThr---ProThrAlaValArgThrArgThrProIleArgThrLeuThrPro
49650 : CCGGTCCGGACT---CCGACCGCGGTCCGGACTCGGACCCCCATCCGGACCCTGACCCCC : 49706
134 : IleArgAlaAlaLeuProValLeuAspSerTyrLeuAlaProAlaLeuProLeuAspPro : 153
!! !|||!.! !|||!.!|||! ! !! ! !.!!||||||! ! !! ! !! !
SerLeuAlaGlyThrProAlaLeuValProThrThrThrProAlaArgIleSerArgLeu
49707 : TCTCTGGCCGGGACTCCCGCTCTGGTCCCGACTACCACTCCGGCCCGGATCTCCCGTCTG : 49766
154 : ProProGluProAlaProGluLeuProLeuLeuProGluGluAspProGluProAlaPro : 173
!||| |||||||||! ! ! !!! ! !|||! ! !||| ||||||! !
ValProThrProAlaProAlaTrpThrSerThrProValProThrProThrProAlaArg
49767 : GTCCCGACTCCGGCTCCGGCCTGGACCTCCACTCCAGTCCCGACTCCTACTCCCGCCCGG : 49826
174 : SerLeuLysLeuIleProSerValSerSerGluAlaGlyProAlaProGlyProLeuPro : 193
!!!! !! ! !||||||!!!:!! ! !! ! !|||!.!! ! !||| !|||
ThrProThrProIleProThrLeuValArgThrLeuThrProValArgLeuProAlaPro
49827 : ACCCCAACTCCGATCCCGACTCTGGTTCGGACCCTGACTCCAGTCCGGCTTCCAGCCCCC : 49886
194 : ThrArgThrProLeuAlaAlaAsnSerProGlyPro : 205
.!!|||! !||| ! !!... :::|||...|||
AlaArgIleProAlaProValProAlaProAlaPro
49887 : GCCCGGATACCGGCCCCGgtcccggccccggccccg : 49924
vulgar: SPP00000029_1.0 93 205 . KV389732.1:subseq(2043714,100413) 49591 49924 + 104 M 24 72 G 1 0 M 87 261
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local gene 49592 49924 104 + . gene_id 6 ; sequence SPP00000029_1.0 ; gene_orientation .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local cds 49592 49924 . + .
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local exon 49592 49924 . + . insertions 0 ; deletions 1
KV389732.1:subseq(2043714,100413) exonerate:protein2genome:local similarity 49592 49924 104 + . alignment_id 6 ; Query SPP00000029_1.0 ; Align 49592 94 72 ; Align 49664 119 261
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis