Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000013_1.0.fa -t ./SPP00000013_1.0/fastasubseq/KV389687.1_fastasubseq.fa]
Hostname: [ws101072u]
C4 Alignment:
------------
Query: SPP00000013_1.0 # Protein # Selenoprotein 15 (Sel15) # Homo sapiens # Complete
Target: KV389687.1:subseq(3301047,100188) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold261, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 584
Query range: 0 -> 124
Target range: 59743 -> 14444
1 : MetValAlaMetAlaAlaGlyProSerGlyCysLeuValProAlaPheGlyLeuArgLeu : 20
:!!:!!||||||||||||||||||.!!|||!! |||:!!||||||||| !|||||||||
ValIleAlaMetAlaAlaGlyProGlyGlyTrpLeuLeuProAlaPheGlnLeuArgLeu
59743 : GTGATAGCGATGGCGGCTGGGCCGGGTGGGTGGCTGTTGCCGGCGTTTCAGCTACGGTTG : 59686
21 : LeuLeuAlaThrValLeuGlnAla >>>> Target Intron 1 >>>> ValSerA : 31
|||!!!|||||||||||||||!.! 9471 bp |||||||
LeuPheAlaThrValLeuGlnVal++ ++ValSerA
59685 : TTGTTCGCGACTGTGCTTCAAGTGgt.........................aggtgtCTG : 50182
32 : laPheGlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuL : 51
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
laPheGlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuL
50181 : CTTTTGGGGCAGAGTTTTCATCCGAGGCATGCAGAGAGTTAGGCTTCTCTAGCAACTTGC : 50122
52 : euCysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysA : 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
euCysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysA
50121 : TCTGCAGCTCTTGTGATCTTCTTGGACAGTTCAACCTGCTTCAGCTGGATCCTGATTGCA : 50062
72 : rgGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys >>>> Target Intro : 85
||||||||||||||||||||||||||||||||||||||||| 18028 bp
rgGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys++
50061 : GAGGATGCTGTCAGGAAGAAGCACAATTTGAAACCAAAAAGgt................. : 50018
86 : n 2 >>>> LeuTyrAlaGlyAlaIleLeuGluValCysGlyUnkLysLeuGlyArgPh : 101
||||||||||||||||||||||||||||||||| ||||||||||||||
++LeuTyrAlaGlyAlaIleLeuGluValCysGly***LysLeuGlyArgPh
50017 : ........agcTGTATGCAGGAGCTATTCTTGAGGTTTGTGGATGAAAATTGGGAAGGTT : 31944
102 : eProGlnValGln{V} >>>> Target Intron 3 >>>> {al}CysProTrpPh : 110
|||||||||||||{|} 17428 bp {||}|||||| !!||
eProGlnValGln{V}++ ++{al}CysProArgPh
31943 : CCCTCAAGTCCAA{G}gt.........................ag{TA}TGTCCGAGGTT : 14489
111 : eArgProCysIleLysAlaPheGlyArgGlnTrpGluHisCys : 124
||||||||||.!!||||||||||||||||||||||||||||||
eArgProCysPheLysAlaPheGlyArgGlnTrpGluHisCys
14488 : CAGACCCTGTTTTAAAGCTTTTGGACGACAATGGGAACATTGC : 14445
vulgar: SPP00000013_1.0 0 124 . KV389687.1:subseq(3301047,100188) 59743 14444 - 584 M 28 84 5 0 2 I 0 9467 3 0 2 M 56 168 5 0 2 I 0 18024 3 0 2 M 21 63 S 0 1 5 0 2 I 0 17424 3 0 2 S 1 2 M 18 54
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local gene 14445 59743 584 - . gene_id 1 ; sequence SPP00000013_1.0 ; gene_orientation +
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local cds 59660 59743 . - .
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local exon 59660 59743 . - . insertions 0 ; deletions 0
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local splice5 59658 59659 . - . intron_id 1 ; splice_site "GT"
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local intron 50189 59659 . - . intron_id 1
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local splice3 50189 50190 . - . intron_id 0 ; splice_site "ag"
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local cds 50021 50188 . - .
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local exon 50021 50188 . - . insertions 0 ; deletions 0
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local splice5 50019 50020 . - . intron_id 2 ; splice_site "GT"
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local intron 31993 50020 . - . intron_id 2
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local splice3 31993 31994 . - . intron_id 1 ; splice_site "ag"
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local cds 31929 31992 . - .
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local exon 31929 31992 . - . insertions 0 ; deletions 0
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local splice5 31927 31928 . - . intron_id 3 ; splice_site "GT"
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local intron 14501 31928 . - . intron_id 3
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local splice3 14501 14502 . - . intron_id 2 ; splice_site "AG"
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local cds 14445 14500 . - .
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local exon 14445 14500 . - . insertions 0 ; deletions 0
KV389687.1:subseq(3301047,100188) exonerate:protein2genome:local similarity 14445 59743 584 - . alignment_id 1 ; Query SPP00000013_1.0 ; Align 59744 1 84 ; Align 50189 29 168 ; Align 31993 85 63 ; Align 14499 107 54
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis