Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000380_2.0.fa -t ./SPP00000380_2.0/fastasubseq/KV389661.1_fastasubseq.fa]
Hostname: [ws101072u]
C4 Alignment:
------------
Query: SPP00000380_2.0 # Protein # Phosphoseryl-tRNA kinase (PSTK) # Marmoset
Target: KV389661.1:subseq(2195455,100227) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold235, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 1246
Query range: 0 -> 269
Target range: 52804 -> 46304
1 : MetLysThrAlaGluAsnAsnArgGlyThrGlySerGluGlyProArgLysArgGlyLeu : 20
||||||||||||||||||!.!|||||||||||||||!!:||||||!:!||||||||||||
MetLysThrAlaGluAsnThrArgGlyThrGlySerAspGlyProGlnLysArgGlyLeu
52804 : ATGAAGACCGCCGAGAACACCAGAGGAACCGGCAGCGATGGGCCGCAGAAACGAGGCCTC : 52747
21 : CysValLeuCysGlyLeuProGlyAlaGlyLysSerThrPheAlaArgAlaLeuAlaHis : 40
|||||||||||||||||||||!.!||||||||||||||||||||||||||||||||||||
CysValLeuCysGlyLeuProAlaAlaGlyLysSerThrPheAlaArgAlaLeuAlaHis
52746 : TGCGTCCTCTGCGGCCTCCCTGCGGCAGGAAAATCGACTTTCGCGCGCGCCCTCGCCCAC : 52687
41 : ArgLeuArgGlnGluGlnGlyTrpAlaValGlyValValAlaTyrAspAspValMetPro : 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ArgLeuArgGlnGluGlnGlyTrpAlaValGlyValValAlaTyrAspAspValMetPro
52686 : AGGCTACGGCAAGAGCAGGGCTGGGCCGTCGGCGTCGTCGCGTATGATGACGTCATGCCA : 52627
61 : AspAlaPheLeuAlaGlyAlaSerAlaLeuProAla >>>> Target Intron 1 > : 73
|||||||||||||||||||||||||||||||||||| 2361 bp
AspAlaPheLeuAlaGlyAlaSerAlaLeuProAla++
52626 : GACGCGTTTCTCGCCGGGGCAAGCGCTCTACCGGCGgt...................... : 52586
74 : >>> ProSerGlnTrpLysLeuLeuArgGlnGluLeuLeuLysTyrLeuGluTyrPheL : 91
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
++ProSerGlnTrpLysLeuLeuArgGlnGluLeuLeuLysTyrLeuGluTyrPheL
52585 : ...agCCATCCCAGTGGAAATTGCTTCGACAGGAACTGTTGAAGTACCTGGAATACTTCT : 50173
92 : euMetAlaValIleAsnGlyCysGlnMetSerAlaProProAspArgThrGluAlaMetT : 111
|||||||||||||||||||||||||||||||||||||||||..!||||||||||||||||
euMetAlaValIleAsnGlyCysGlnMetSerAlaProProSerArgThrGluAlaMetT
50172 : TGATGGCTGTGATTAATGGGTGTCAGATGTCTGCCCCACCCAGCAGGACTGAAGCCATGT : 50113
112 : rpGluAspPheThrThrCysLeuLysAspGlnAspLeuIlePheSerAlaAlaPheGluA : 131
|||||||||||! !||||||||||||||||||||||||||||||||||||||||||||||
rpGluAspPheIleThrCysLeuLysAspGlnAspLeuIlePheSerAlaAlaPheGluA
50112 : GGGAAGATTTTATAACCTGTTTAAAGGATCAAGATCTGATATTTTCTGCAGCATTTGAGG : 50053
132 : laArgSerCysTyrLeuLeuThrLysThrAlaValSerArgProTyrSerLeu >>>> : 149
||!:!|||||||||||||||||||||||||||||||||||||||! !|||
laGlnSerCysTyrLeuLeuThrLysThrAlaValSerArgProLeuLeuLeu++
50052 : CCCAGTCCTGCTACCTCTTAACAAAAACTGCTGTTTCTAGACCTTTGCTTTTGgt..... : 49997
150 : Target Intron 2 >>>> GlyPheCysGlnLeuPheLeuAspCysProLeuGluTh : 161
311 bp ||||||||||||||||||||||||||||||||||||||
-+GlyPheCysGlnLeuPheLeuAspCysProLeuGluTh
49996 : ....................tgGGCTTTTGCCAGCTCTTTTTAGATTGTCCTCTTGAGAC : 49652
162 : rCysLeuGlnArgAsnGlyGlnArgProArgAlaLeuProAlaGluThrIleHisLeuMe : 181
||||||||||||||||||||||||||||!:!||||||||||||! !||||||!.!|||||
rCysLeuGlnArgAsnGlyGlnArgProGlnAlaLeuProAlaAlaThrIleArgLeuMe
49651 : CTGTTTACAGAGGAATGGCCAGAGGCCACAGGCACTGCCTGCTGCGACCATCCGCCTGAT : 49592
182 : tGlyArgLysLeuGluLysProAsnProGluLysAsnAlaTrpGluHisAsnSerLeuTh : 201
||||||||||||||||||||||!:!|||||||||||||||||||||||||||||||||||
tGlyArgLysLeuGluLysProSerProGluLysAsnAlaTrpGluHisAsnSerLeuTh
49591 : GGGAAGAAAGCTAGAAAAGCCCAGCCCTGAGAAAAATGCTTGGGAACACAACAGCCTCAC : 49532
202 : rLeuGlnSerProAlaCysAlaSerGlyAla{Se} >>>> Target Intron 3 >> : 212
|||||||||||||||| !!||||||||||||{||} 2527 bp
rLeuGlnSerProAlaGlyAlaSerGlyAla{Se}++
49531 : ACTGCAGAGTCCAGCGGGTGCTTCAGGGGCC{AG}gt....................... : 49495
213 : >> {r}LeuGluValThrAspLeuLeuLeuThrAlaLeuGluAsnProValLysTyrAl : 230
{|}||||||||||||||||||||||||!:!||||||||||||||||||||||||||
++{r}LeuGluValThrAspLeuLeuLeuSerAlaLeuGluAsnProValLysTyrAl
49494 : ..ag{C}CTGGAGGTGACTGATTTATTGCTCAGTGCTTTGGAAAATCCAGTAAAATATGC : 46918
231 : aGluAspAsnMetGluGlnLys >>>> Target Intron 4 >>>> AspThrAsp : 240
|||||||||||||||||||||| 494 bp |||||||||
aGluAspAsnMetGluGlnLys++ ++AspThrAsp
46917 : TGAGGACAATATGGAACAAAAGgt.........................agGACACAGAC : 46394
241 : ArgIleIleCysSerThrAsnIleLeuHisThrAlaAspValThrLeuArgArgIleVal : 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ArgIleIleCysSerThrAsnIleLeuHisThrAlaAspValThrLeuArgArgIleVal
46393 : AGAattatttgttcaacaaacattCTTCATACAGCTGATGTGACACTCCGAAGAATTGTA : 46334
261 : SerGlnThrMetLysGluAlaLysGly : 269
|||||||||||||||||||||||||||
SerGlnThrMetLysGluAlaLysGly
46333 : TCTCAGACAATGAAGGAAGCAAAAGGT : 46305
vulgar: SPP00000380_2.0 0 269 . KV389661.1:subseq(2195455,100227) 52804 46304 - 1246 M 72 216 5 0 2 I 0 2357 3 0 2 M 76 228 5 0 2 I 0 307 3 0 2 M 63 189 S 0 2 5 0 2 I 0 2523 3 0 2 S 1 1 M 25 75 5 0 2 I 0 490 3 0 2 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local gene 46305 52804 1246 - . gene_id 1 ; sequence SPP00000380_2.0 ; gene_orientation +
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local cds 52589 52804 . - .
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local exon 52589 52804 . - . insertions 0 ; deletions 0
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local splice5 52587 52588 . - . intron_id 1 ; splice_site "GT"
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local intron 50228 52588 . - . intron_id 1
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local splice3 50228 50229 . - . intron_id 0 ; splice_site "AG"
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local cds 50000 50227 . - .
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local exon 50000 50227 . - . insertions 0 ; deletions 0
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local splice5 49998 49999 . - . intron_id 2 ; splice_site "GT"
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local intron 49689 49999 . - . intron_id 2
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local splice3 49689 49690 . - . intron_id 1 ; splice_site "TG"
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local cds 49498 49688 . - .
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local exon 49498 49688 . - . insertions 0 ; deletions 0
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local splice5 49496 49497 . - . intron_id 3 ; splice_site "GT"
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local intron 46971 49497 . - . intron_id 3
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local splice3 46971 46972 . - . intron_id 2 ; splice_site "AG"
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local cds 46895 46970 . - .
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local exon 46895 46970 . - . insertions 0 ; deletions 0
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local splice5 46893 46894 . - . intron_id 4 ; splice_site "GT"
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local intron 46401 46894 . - . intron_id 4
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local splice3 46401 46402 . - . intron_id 3 ; splice_site "AG"
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local cds 46305 46400 . - .
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local exon 46305 46400 . - . insertions 0 ; deletions 0
KV389661.1:subseq(2195455,100227) exonerate:protein2genome:local similarity 46305 52804 1246 - . alignment_id 1 ; Query SPP00000380_2.0 ; Align 52805 1 216 ; Align 50228 73 228 ; Align 49689 149 189 ; Align 46970 213 75 ; Align 46401 238 96
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis