Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000320_2.0.fa -t ./SPP00000320_2.0/fastasubseq/KV389646.1_fastasubseq.fa]
Hostname: [ws101073u]
C4 Alignment:
------------
Query: SPP00000320_2.0 # Protein # Glutathione peroxidase (GPx) # Marmoset
Target: KV389646.1:subseq(2887198,100245) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold220, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 323
Query range: 0 -> 83
Target range: 50245 -> 49999
1 : AlaHisSerMetHisGluPheSerAlaLysAspIleAspGlyHisMetValAsnLeuAsp : 20
|||!.!|||! !|||:!!|||||||||||||||||||||||||||! ! !!|||||||||
AlaArgSerThrHisLysPheSerAlaLysAspIleAspGlyHisThrPheAsnLeuAsp
50245 : GCGCGTTCCACGCACAAGTTTTCCGCCAAGGACATTGACGGGCACACGTTTAACCTGGAC : 50188
21 : GluTyrTrpGlyPheValCysIleValThrAsnValAlaSerGlnUnkGlyLysThrGlu : 40
:!!||| !!|||||||||||||||||||||||||||||||||||| ||||||||||||
LysTyrArgGlyPheValCysIleValThrAsnValAlaSerGln***GlyLysThrGlu
50187 : AAGTACCGGGGCTTCGTGTGCATCGTCACCAACGTGGCCTCCCAATGAGGCAAAACCGAA : 50128
41 : ValAsnTyrThrArgLeuValAspLeuHisAlaArgTyrAlaGluCysGlyLeuTrpIle : 60
|||||||||.!!!:!! !|||||||||||||||! !:!!||||||||||||||| !!|||
ValAsnTyrAlaGlnProValAspLeuHisAlaProHisAlaGluCysGlyLeuArgIle
50127 : GTGAACTACGCTCAGCCTGTCGACCTGCACGCCCCACACGCTGAGTGTGGTTTGCGGATC : 50068
61 : LeuAlaPheProCysIleGlnPheGlyLysGlnGluProGlyGlyAsnGluGluIleLys : 80
||||||||||||||| !|||||||||||||||||||||||||||||||||.!. |||
LeuAlaPheProCysProGlnPheGlyLysGlnGluProGlyGlyAsnGluAsn---Lys
50067 : CTGGCCTTCCCCTGCCCCCAGTTCGGGAAGCAGGAGCCGGGGGGTAACGAGAAC---AAA : 50011
81 : GluPheAla : 83
|||||||||
GluPheAla
50010 : GAGTTCGCC : 50000
vulgar: SPP00000320_2.0 0 83 . KV389646.1:subseq(2887198,100245) 50245 49999 - 323 M 78 234 G 1 0 M 4 12
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389646.1:subseq(2887198,100245) exonerate:protein2genome:local gene 50000 50245 323 - . gene_id 1 ; sequence SPP00000320_2.0 ; gene_orientation .
KV389646.1:subseq(2887198,100245) exonerate:protein2genome:local cds 50000 50245 . - .
KV389646.1:subseq(2887198,100245) exonerate:protein2genome:local exon 50000 50245 . - . insertions 0 ; deletions 1
KV389646.1:subseq(2887198,100245) exonerate:protein2genome:local similarity 50000 50245 323 - . alignment_id 1 ; Query SPP00000320_2.0 ; Align 50246 1 234 ; Align 50012 80 12
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis