Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000007_1.0.fa -t ./SPP00000007_1.0/fastasubseq/KV389646.1_fastasubseq.fa]
Hostname: [ws101072u]
C4 Alignment:
------------
Query: SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Homo sapiens # Complete
Target: KV389646.1:subseq(2886967,100509) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold220, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 834
Query range: 10 -> 197
Target range: 50557 -> 49999
11 : LysProAlaLeuLeuCysGlyAlaLeuAlaAlaProGlyLeuAlaGlyThrMetCysAla : 30
||||||||||||||||||||||||||||||! !||||||||||||||||||! !|||.!!
LysProAlaLeuLeuCysGlyAlaLeuAlaAspProGlyLeuAlaGlyThrThrCysThr
50557 : AAGCCCGCGCTGCTCTGTGGGGCTCTGGCCGATCCGGGCCTGGCCGGCACCACGTGCACG : 50500
31 : SerArgAspAspTrpArgCysAlaArgSerMetHisGluPheSerAlaLysAspIleAsp : 50
|||!:!||||||||||||||||||||||||! !|||:!!|||||||||||||||||||||
SerGlnAspAspTrpArgCysAlaArgSerThrHisLysPheSerAlaLysAspIleAsp
50499 : TCCCAGGACGACTGGCGCTGTGCGCGTTCCACGCACAAGTTTTCCGCCAAGGACATTGAC : 50440
51 : GlyHisMetValAsnLeuAspLysTyrArgGlyPheValCysIleValThrAsnValAla : 70
||||||! ! !!||||||||||||||||||||||||||||||||||||||||||||||||
GlyHisThrPheAsnLeuAspLysTyrArgGlyPheValCysIleValThrAsnValAla
50439 : GGGCACACGTTTAACCTGGACAAGTACCGGGGCTTCGTGTGCATCGTCACCAACGTGGCC : 50380
71 : SerGlnUnkGlyLysThrGluValAsnTyrThrGlnLeuValAspLeuHisAlaArgTyr : 90
|||||| |||||||||||||||||||||.!!|||! !|||||||||||||||! !:!!
SerGln***GlyLysThrGluValAsnTyrAlaGlnProValAspLeuHisAlaProHis
50379 : TCCCAATGAGGCAAAACCGAAGTGAACTACGCTCAGCCTGTCGACCTGCACGCCCCACAC : 50320
91 : AlaGluCysGlyLeuArgIleLeuAlaPheProCysAsnGlnPheGlyLysGlnGluPro : 110
|||||||||||||||||||||||||||||||||||| !|||||||||||||||||||||
AlaGluCysGlyLeuArgIleLeuAlaPheProCysProGlnPheGlyLysGlnGluPro
50319 : GCTGAGTGTGGTTTGCGGATCCTGGCCTTCCCCTGCCCCCAGTTCGGGAAGCAGGAGCCG : 50260
111 : GlySerAsnGluGluIleLysGluPheAlaAlaGlyTyrAsnValLysPheAspMetPhe : 130
|||.!!||||||.!. ||||||||||||.!!! !||||||||||||||||||! !|||
GlyGlyAsnGluAsn---LysGluPheAlaThrValTyrAsnValLysPheAspThrPhe
50259 : GGGGGTAACGAGAAC---AAAGAGTTCGCCACTGTCTATAACGTCAAATTCGACACGTTC : 50203
131 : SerLysIleCysValAsnGlyAspAspAlaHisProLeuTrpLysTrpMetLysIleGln : 150
|||||||||||||||||| !!|||||||||||||||||||||||||||||||||||||||
SerLysIleCysValAsnTrpAspAspAlaHisProLeuTrpLysTrpMetLysIleGln
50202 : AGCAAGATCTGCGTGAACTGGGATGACGCCCACCCGCTGTGGAAGTGGATGAAGATCCAG : 50143
151 : ProLysGlyLysGlyIleLeuGlyAsnAlaIleLysTrpAsnPheThrLysPheLeuIle : 170
||||||||||||! !:!!|||||||||||||||:!!||||||||||||||||||||||||
ProLysGlyLysAspLeuLeuGlyAsnAlaIleGlnTrpAsnPheThrLysPheLeuIle
50142 : CCCAAGGGCAAGGACCTCCTAGGAAATGCCATCCAGTGGAACTTCACCAAGTTCCTCATT : 50083
171 : AspLysAsnGlyCysValValLysArgTyrGlyProMetGluGluProLeuValIleGlu : 190
|||||||||||||||||||||||| !!! !||||||||||||||||||! !|||||||||
AspLysAsnGlyCysValValLysTrpCysGlyProMetGluGluProGlnValIleGlu
50082 : GACAAGAATGGCTGTGTGGTGAAGTGGTGCGGACCCATGGAGGAGCCCCAGGTCATAGAG : 50023
191 : LysAspLeuProHisTyrPhe : 197
|||||||||||| !:!!|||
LysAspLeuProCysHisPhe
50022 : AAGGACCTGCCCTGCCATTTC : 50000
vulgar: SPP00000007_1.0 10 197 . KV389646.1:subseq(2886967,100509) 50557 49999 - 834 M 105 315 G 1 0 M 81 243
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389646.1:subseq(2886967,100509) exonerate:protein2genome:local gene 50000 50557 834 - . gene_id 1 ; sequence SPP00000007_1.0 ; gene_orientation .
KV389646.1:subseq(2886967,100509) exonerate:protein2genome:local cds 50000 50557 . - .
KV389646.1:subseq(2886967,100509) exonerate:protein2genome:local exon 50000 50557 . - . insertions 0 ; deletions 1
KV389646.1:subseq(2886967,100509) exonerate:protein2genome:local similarity 50000 50557 834 - . alignment_id 1 ; Query SPP00000007_1.0 ; Align 50558 11 315 ; Align 50243 117 243
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis