Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000329_2.0.fa -t ./SPP00000329_2.0/fastasubseq/KV389646.1_fastasubseq.fa]
Hostname: [ws101073u]

C4 Alignment:
------------
         Query: SPP00000329_2.0 # Protein # Glutathione peroxidase (GPx) # Marmoset 
        Target: KV389646.1:subseq(2886976,100467) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold220, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 704
   Query range: 1 -> 158
  Target range: 50467 -> 49999

     2 : AlaArgSerMetHisGluPheSerAlaLysAspIleAspGlyHisThrValAsnLeuAsp :    21
         |||||||||! !|||:!!|||||||||||||||||||||||||||||| !!|||||||||
         AlaArgSerThrHisLysPheSerAlaLysAspIleAspGlyHisThrPheAsnLeuAsp
 50467 : GCGCGTTCCACGCACAAGTTTTCCGCCAAGGACATTGACGGGCACACGTTTAACCTGGAC : 50410

    22 : LysTyrArgGlyPheValCysIleValThrAsnValAlaSerGlnUnkGlyLysThrGln :    41
         |||||||||||||||||||||||||||||||||||||||||||||   |||||||||:!!
         LysTyrArgGlyPheValCysIleValThrAsnValAlaSerGln***GlyLysThrGlu
 50409 : AAGTACCGGGGCTTCGTGTGCATCGTCACCAACGTGGCCTCCCAATGAGGCAAAACCGAA : 50350

    42 : ValAsnTyrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyLeuArgIle :    61
         |||||||||.!!|||! !|||||||||||||||! !:!!|||||||||||||||||||||
         ValAsnTyrAlaGlnProValAspLeuHisAlaProHisAlaGluCysGlyLeuArgIle
 50349 : GTGAACTACGCTCAGCCTGTCGACCTGCACGCCCCACACGCTGAGTGTGGTTTGCGGATC : 50290

    62 : LeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlySerAsnGluGluIleLys :    81
         |||||||||||||||  !||||||||||||||||||||||||.!!||||||.!.   |||
         LeuAlaPheProCysProGlnPheGlyLysGlnGluProGlyGlyAsnGluAsn---Lys
 50289 : CTGGCCTTCCCCTGCCCCCAGTTCGGGAAGCAGGAGCCGGGGGGTAACGAGAAC---AAA : 50233

    82 : GluPheAlaAlaGlyTyrAsnValLysPheAspMetPheSerLysIleCysValAsnGly :   101
         |||||||||.!!! !||||||||||||||||||! !||||||||||||||||||||| !!
         GluPheAlaThrValTyrAsnValLysPheAspThrPheSerLysIleCysValAsnTrp
 50232 : GAGTTCGCCACTGTCTATAACGTCAAATTCGACACGTTCAGCAAGATCTGCGTGAACTGG : 50173

   102 : AspAspAlaHisProLeuTrpLysTrpMetLysIleGlnProLysGlyLysGlyThrLeu :   121
         |||||||||||||||||||||||||||||||||||||||||||||||||||! !  !|||
         AspAspAlaHisProLeuTrpLysTrpMetLysIleGlnProLysGlyLysAspLeuLeu
 50172 : GATGACGCCCACCCGCTGTGGAAGTGGATGAAGATCCAGCCCAAGGGCAAGGACCTCCTA : 50113

   122 : GlyAsnAlaIleLysTrpAsnPheThrLysPheLeuValAspLysAsnGlyCysValVal :   141
         ||||||||||||:!!|||||||||||||||||||||:!!|||||||||||||||||||||
         GlyAsnAlaIleGlnTrpAsnPheThrLysPheLeuIleAspLysAsnGlyCysValVal
 50112 : GGAAATGCCATCCAGTGGAACTTCACCAAGTTCCTCATTGACAAGAATGGCTGTGTGGTG : 50053

   142 : LysArgTyrGlyProMetGluGluProGlnValIleGluLysAspLeuPro :   158
         ||| !!! !||||||||||||||||||||||||||||||||||||||||||
         LysTrpCysGlyProMetGluGluProGlnValIleGluLysAspLeuPro
 50052 : AAGTGGTGCGGACCCATGGAGGAGCCCCAGGTCATAGAGAAGGACCTGCCC : 50000

vulgar: SPP00000329_2.0 1 158 . KV389646.1:subseq(2886976,100467) 50467 49999 - 704 M 78 234 G 1 0 M 78 234
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389646.1:subseq(2886976,100467)	exonerate:protein2genome:local	gene	50000	50467	704	-	.	gene_id 1 ; sequence SPP00000329_2.0 ; gene_orientation .
KV389646.1:subseq(2886976,100467)	exonerate:protein2genome:local	cds	50000	50467	.	-	.	
KV389646.1:subseq(2886976,100467)	exonerate:protein2genome:local	exon	50000	50467	.	-	.	insertions 0 ; deletions 1
KV389646.1:subseq(2886976,100467)	exonerate:protein2genome:local	similarity	50000	50467	704	-	.	alignment_id 1 ; Query SPP00000329_2.0 ; Align 50468 2 234 ; Align 50234 81 234
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis