Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000318_2.0.fa -t ./SPP00000318_2.0/fastasubseq/KV389646.1_fastasubseq.fa]
Hostname: [ws101073u]
C4 Alignment:
------------
Query: SPP00000318_2.0 # Protein # Glutathione peroxidase (GPx) # Marmoset
Target: KV389646.1:subseq(2887024,100419) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold220, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 567
Query range: 1 -> 142
Target range: 50419 -> 49999
2 : AlaHisSerMetHisGluPheSerThrLysGlyIleTyrGlyHisMetValAsnLeuAsp : 21
|||!.!|||! !|||:!!||||||.!!|||! !||| !!||||||! ! !!|||||||||
AlaArgSerThrHisLysPheSerAlaLysAspIleAspGlyHisThrPheAsnLeuAsp
50419 : GCGCGTTCCACGCACAAGTTTTCCGCCAAGGACATTGACGGGCACACGTTTAACCTGGAC : 50362
22 : LysTyrArgGlyPheValCysIleValThrAsnValAlaSerGlnUnkGlyLysThrGlu : 41
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
LysTyrArgGlyPheValCysIleValThrAsnValAlaSerGln***GlyLysThrGlu
50361 : AAGTACCGGGGCTTCGTGTGCATCGTCACCAACGTGGCCTCCCAATGAGGCAAAACCGAA : 50302
42 : ValAsnTyrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyLeuArgIle : 61
|||||||||.!!|||! !|||||||||||||||! !:!!|||||||||||||||||||||
ValAsnTyrAlaGlnProValAspLeuHisAlaProHisAlaGluCysGlyLeuArgIle
50301 : GTGAACTACGCTCAGCCTGTCGACCTGCACGCCCCACACGCTGAGTGTGGTTTGCGGATC : 50242
62 : LeuAlaPheProCysAsnGlnPheGlyLysGlnGlyProGlySerAsnGluGluIleLys : 81
||||||||||||||| !|||||||||||||||! !||||||.!!||||||.!. |||
LeuAlaPheProCysProGlnPheGlyLysGlnGluProGlyGlyAsnGluAsn---Lys
50241 : CTGGCCTTCCCCTGCCCCCAGTTCGGGAAGCAGGAGCCGGGGGGTAACGAGAAC---AAA : 50185
82 : GlyPheAlaAlaGlyTyrAsnValGlnPheAspIlePheSerLysIleArgValAsnGly : 101
! !||||||.!!! !|||||||||:!!||||||! |||||||||||| !!|||||| !!
GluPheAlaThrValTyrAsnValLysPheAspThrPheSerLysIleCysValAsnTrp
50184 : GAGTTCGCCACTGTCTATAACGTCAAATTCGACACGTTCAGCAAGATCTGCGTGAACTGG : 50125
102 : AspAspAlaHisProLeuTrpLysTrpMetLysLeuGlnProLysGlyLysGlyIleLeu : 121
|||||||||||||||||||||||||||||||||:!!|||||||||||||||! !:!!|||
AspAspAlaHisProLeuTrpLysTrpMetLysIleGlnProLysGlyLysAspLeuLeu
50124 : GATGACGCCCACCCGCTGTGGAAGTGGATGAAGATCCAGCCCAAGGGCAAGGACCTCCTA : 50065
122 : GlyAsnAlaThrLysTrpAsnPheThrLysIleLeuIleAspLysAsnGlyCysValVal : 141
|||||||||! !:!!|||||||||||||||.!!|||||||||||||||||||||||||||
GlyAsnAlaIleGlnTrpAsnPheThrLysPheLeuIleAspLysAsnGlyCysValVal
50064 : GGAAATGCCATCCAGTGGAACTTCACCAAGTTCCTCATTGACAAGAATGGCTGTGTGGTG : 50005
142 : Lys : 142
|||
Lys
50004 : AAG : 50000
vulgar: SPP00000318_2.0 1 142 . KV389646.1:subseq(2887024,100419) 50419 49999 - 567 M 78 234 G 1 0 M 62 186
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389646.1:subseq(2887024,100419) exonerate:protein2genome:local gene 50000 50419 567 - . gene_id 1 ; sequence SPP00000318_2.0 ; gene_orientation .
KV389646.1:subseq(2887024,100419) exonerate:protein2genome:local cds 50000 50419 . - .
KV389646.1:subseq(2887024,100419) exonerate:protein2genome:local exon 50000 50419 . - . insertions 0 ; deletions 1
KV389646.1:subseq(2887024,100419) exonerate:protein2genome:local similarity 50000 50419 567 - . alignment_id 1 ; Query SPP00000318_2.0 ; Align 50420 2 234 ; Align 50186 81 186
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis