Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000316_2.0.fa -t ./SPP00000316_2.0/fastasubseq/KV389640.1_fastasubseq.fa]
Hostname: [ws101073u]
C4 Alignment:
------------
Query: SPP00000316_2.0 # Protein # Glutathione peroxidase 7 (GPx7) # Marmoset
Target: KV389640.1:subseq(3351213,100275) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold214, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 603
Query range: 0 -> 126
Target range: 49999 -> 51704
1 : GlnValSerLeuValValAsnValAlaSerGluCysGlyPheThrAspGlnHisTyrArg : 20
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlnValSerLeuValValAsnValAlaSerGluCysGlyPheThrAspGlnHisTyrArg
50000 : CAGGTGTCCCTGGTGGTGAATGTGGCCAGCGAGTGCGGCTTCACAGATCAGCACTACCGa : 50057
21 : AlaLeuGlnGlnLeuGlnArgAspLeuGlyProHisHisPheAsnValLeuAlaPhePro : 40
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AlaLeuGlnGlnLeuGlnArgAspLeuGlyProHisHisPheAsnValLeuAlaPhePro
50058 : gccctgcagcagctgcagcggGACCTGGGTCCCCACCACTTCAACGTGCTTGCCTTCCCC : 50117
41 : CysAsnGlnPheGlyGlnGlnGluProAspSerAsnLysGluIleGluSerPheAlaArg : 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CysAsnGlnPheGlyGlnGlnGluProAspSerAsnLysGluIleGluSerPheAlaArg
50118 : TGCAACCAGTTTGGCCAACAGGAGCCTGACAGCAACAAGGAGATTGAGAGCTTTGCCCGC : 50177
61 : ArgThrTyrSerValSerPheProMetPheSerLysIleAlaValThrGlyThrGlyAla : 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ArgThrTyrSerValSerPheProMetPheSerLysIleAlaValThrGlyThrGlyAla
50178 : CGCACCTACAGTGTCTCATTCCCCATGTTTAGCAAGATTGCAGTAACTGGTACCGGTGCC : 50237
81 : HisProAlaPheLysTyrLeuThr{T} >>>> Target Intron 1 >>>> {rp} : 89
|||||||||||||||||||||.!!{ } 1327 bp {!!}
HisProAlaPheLysTyrLeuAla{A}++ --{rg}
50238 : CATCCTGCCTTCAAGTACCTGGCC{C}gt.........................ct{GG} : 51592
90 : AsnPheTrpLysTyrLeuValSerProAspGlyLysValValGlyAlaTrpAspProThr : 109
|||||||||||||||||||||:!!||||||||||||||||||||||||||||||||||||
AsnPheTrpLysTyrLeuValAlaProAspGlyLysValValGlyAlaTrpAspProThr
51593 : AACTTCTGGAAATACCTTGTAGCCCCAGATGGAAAGGTGGTAGGGGCTTGGGACCCAACC : 51651
110 : ValSerValGluGluIleArgProGlnIleThrAlaLeuValArgLysLeu : 126
||||||||||||||||||||||||||||||.!!||||||||||||||||||
ValSerValGluGluIleArgProGlnIleAlaAlaLeuValArgLysLeu
51652 : GTGTCAGTGGAGGAGATCAGACCCCAGATCGCAGCACTTGTGAGGAAGCTC : 51704
vulgar: SPP00000316_2.0 0 126 . KV389640.1:subseq(3351213,100275) 49999 51704 + 603 M 88 264 S 0 1 5 0 2 I 0 1323 3 0 2 S 1 2 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389640.1:subseq(3351213,100275) exonerate:protein2genome:local gene 50000 51704 603 + . gene_id 1 ; sequence SPP00000316_2.0 ; gene_orientation +
KV389640.1:subseq(3351213,100275) exonerate:protein2genome:local cds 50000 50264 . + .
KV389640.1:subseq(3351213,100275) exonerate:protein2genome:local exon 50000 50264 . + . insertions 0 ; deletions 0
KV389640.1:subseq(3351213,100275) exonerate:protein2genome:local splice5 50265 50266 . + . intron_id 1 ; splice_site "GT"
KV389640.1:subseq(3351213,100275) exonerate:protein2genome:local intron 50265 51591 . + . intron_id 1
KV389640.1:subseq(3351213,100275) exonerate:protein2genome:local splice3 51590 51591 . + . intron_id 0 ; splice_site "CT"
KV389640.1:subseq(3351213,100275) exonerate:protein2genome:local cds 51592 51704 . + .
KV389640.1:subseq(3351213,100275) exonerate:protein2genome:local exon 51592 51704 . + . insertions 0 ; deletions 0
KV389640.1:subseq(3351213,100275) exonerate:protein2genome:local similarity 50000 51704 603 + . alignment_id 1 ; Query SPP00000316_2.0 ; Align 50000 1 264 ; Align 51594 90 111
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis