Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000317_2.0.fa -t ./SPP00000317_2.0/fastasubseq/KV389639.1_fastasubseq.fa]
Hostname: [ws101073u]
C4 Alignment:
------------
Query: SPP00000317_2.0 # Protein # Glutathione peroxidase 8 (GPx8) # Marmoset
Target: KV389639.1:subseq(28266,100287) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold213, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 534
Query range: 0 -> 123
Target range: 49999 -> 52914
1 : ValSerLeuValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeuAla : 20
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ValSerLeuValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeuAla
50000 : GTTTCACTAGTTGTAAACGTGGCTAGTGACTGCCAACTCACAGACAGAAATTACTTAGCA : 50057
21 : LeuLysGluLeuHisLysGluPheGlyProSerHisPheSerValLeuAlaPheProCys : 40
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuLysGluLeuHisLysGluPheGlyProSerHisPheSerValLeuAlaPheProCys
50058 : CTGAAGGAACTGCACAAAGAGTTTGGACCATCCCACTTCAGCGTGTTGGCTTTCCCGTGC : 50117
41 : AsnGlnPheGlyGluSerGluProArgProSerLysGluValGluSerPheAlaArgLys : 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AsnGlnPheGlyGluSerGluProArgProSerLysGluValGluSerPheAlaArgLys
50118 : AATCAGTTTGGAGAATCGGAGCCCCGCCCGAGCAAGGAAGTAGAATCTTTTGCAAGAAAA : 50177
61 : AsnTyrGlyValThrPheProIlePheHisLysIleLysIleLeuGlySerGluGlyGlu : 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AsnTyrGlyValThrPheProIlePheHisLysIleLysIleLeuGlySerGluGlyGlu
50178 : AACTACGGAGTAACATTCCCCATCTTCCACAAGATTAAGATTCTAGGATCTGAAGGAGAA : 50237
81 : ProAlaPheArgPheLeuArgTrpAsnPheTrpLysTyrLeuValAsnProGlu >>>> : 99
|||||||||||||||||| ! ! !!.!:! ! ! !|||..!!:! !
ProAlaPheArgPheLeuValGlyLysTyrLeuProCysLeuThrSerMetMet-+
50238 : CCTGCATTTAGATTTCTTGTTGGTAAATATCTGCCTTGCCTCACCAGTATGatgtt.... : 50296
100 : Target Intron 1 >>>> GlyGlnValValLysPheTrpArgProGluGluProI : 111
2546 bp |||||||||||||||||||||||||||||||||||||
++GlyGlnValValLysPheTrpArgProGluGluProI
50297 : .....................agGGTCAAGTTGtgaagttctggaggccagaggaaCCCA : 52876
112 : leGluValIleArgProAspIleAlaAlaLeuValArg : 123
||||||||||||||||||||||||||||||||||||||
leGluValIleArgProAspIleAlaAlaLeuValArg
52877 : TTGAAGTCATCAGGCCTGACATAGCAGCTCTGGTTAGA : 52914
vulgar: SPP00000317_2.0 0 123 . KV389639.1:subseq(28266,100287) 49999 52914 + 534 M 98 294 5 0 2 I 0 2542 3 0 2 M 25 75
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389639.1:subseq(28266,100287) exonerate:protein2genome:local gene 50000 52914 534 + . gene_id 1 ; sequence SPP00000317_2.0 ; gene_orientation +
KV389639.1:subseq(28266,100287) exonerate:protein2genome:local cds 50000 50293 . + .
KV389639.1:subseq(28266,100287) exonerate:protein2genome:local exon 50000 50293 . + . insertions 0 ; deletions 0
KV389639.1:subseq(28266,100287) exonerate:protein2genome:local splice5 50294 50295 . + . intron_id 1 ; splice_site "tt"
KV389639.1:subseq(28266,100287) exonerate:protein2genome:local intron 50294 52839 . + . intron_id 1
KV389639.1:subseq(28266,100287) exonerate:protein2genome:local splice3 52838 52839 . + . intron_id 0 ; splice_site "AG"
KV389639.1:subseq(28266,100287) exonerate:protein2genome:local cds 52840 52914 . + .
KV389639.1:subseq(28266,100287) exonerate:protein2genome:local exon 52840 52914 . + . insertions 0 ; deletions 0
KV389639.1:subseq(28266,100287) exonerate:protein2genome:local similarity 50000 52914 534 + . alignment_id 1 ; Query SPP00000317_2.0 ; Align 50000 1 294 ; Align 52840 99 75
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis