Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000371_2.0.fa -t ./SPP00000371_2.0/fastasubseq/KV389628.1_fastasubseq.fa]
Hostname: [ws101092U]
C4 Alignment:
------------
Query: SPP00000371_2.0 # Protein # Selenoprotein U1 (SELENOU1) # Marmoset
Target: KV389628.1:subseq(1921457,100722) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold202, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 1128
Query range: 11 -> 236
Target range: 50674 -> 49999
12 : GlnAspProSerPhePheThrMetGlyMetTrpSerIleGlyAlaGlyAlaLeuGlyAla : 31
|||||||||! !||||||||||||||||||||||||||||||||||||||||||||||||
GlnAspProTyrPhePheThrMetGlyMetTrpSerIleGlyAlaGlyAlaLeuGlyAla
50674 : CAGGACCCATATTTCTTCACCATGGGGATGTGGTCCATTGGTGCGGGAGCCCTGGGGGCT : 50617
32 : AlaAlaLeuAlaLeuLeuLeuAlaAsnThrAspValPheLeuSerLysProGlnLysAla : 51
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AlaAlaLeuAlaLeuLeuLeuAlaAsnThrAspValPheLeuSerLysProGlnLysAla
50616 : GCTGCCTTGGCATTGCTGCTGGCCAACACAGACGTGTTTCTGTCCAAGCCCCAGAAAGCA : 50557
52 : AlaLeuGluTyrLeuGluAspIleAspLeuLysThrLeuGluAsnGluProArgThrLeu : 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AlaLeuGluTyrLeuGluAspIleAspLeuLysThrLeuGluAsnGluProArgThrLeu
50556 : GCACTGGAGTACCTGGAGGATATTGACCTGAAAACACTGGAGAACGAACCAAGGACTTTG : 50497
72 : LysAlaLysGluLeuTrpGluLysAsnGlyAlaValIleMetAlaValArgArgProGly : 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LysAlaLysGluLeuTrpGluLysAsnGlyAlaValIleMetAlaValArgArgProGly
50496 : AAAGCAAAGGAGctatgggaaaaaaatggagCTGTGATTATGGCTGTGCGGAGGCCAGGC : 50437
92 : CysPheLeuCysArgGluGluAlaAlaAspLeuSerSerLeuLysProLysLeuAspGlu : 111
|||||||||||||||||||||!.!:!!|||||||||||||||||||||||||||||||||
CysPheLeuCysArgGluGluValSerAspLeuSerSerLeuLysProLysLeuAspGlu
50436 : TGTTTCCTCTGTAGAGAGGAAGTTTCGGATCTGTCCTCCCTGAAACCCAAGTTGGACGAG : 50377
112 : LeuGlyValProLeuTyrAlaValValLysGluHisIleLysThrGluValLysAspPhe : 131
||||||||||||||||||||||||||||||||||||||||||!.!|||||||||||||||
LeuGlyValProLeuTyrAlaValValLysGluHisIleLysAsnGluValLysAspPhe
50376 : CTTGGCGTCCCCCTCTATGCAGTGGTAAAGGAGCACATCAAGAATGAAGTGAAGGATTTC : 50317
132 : GlnProTyrPheLysGlyGluValPheLeuAspGluLysLysLysPheTyrGlyProGln : 151
|||||||||||||||||||||:!!|||||| |||||||||||||||||||||||||||
GlnProTyrPheLysGlyGluIlePheLeuTyrGluLysLysLysPheTyrGlyProGln
50316 : CAGCCTTATTTCAAAGGAGAAATCTTCctgtatgaaaagaaaaagttctatGGTCCACAA : 50257
152 : ArgArgLysMetMetPheMetGlyPheIleArgLeuGlyValTrpTyrAsnPhePheArg : 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ArgArgLysMetMetPheMetGlyPheIleArgLeuGlyValTrpTyrAsnPhePheArg
50256 : AGGCGGAAGATGATGTTTATGGGATTTATCCGTCTGGGAGTGTGGTACAACTTCTTCCGA : 50197
172 : AlaTrpAsnGlyGlyPheSerGlyAsnLeuGluGlyGluGlyPheValLeuGlyGlyVal : 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AlaTrpAsnGlyGlyPheSerGlyAsnLeuGluGlyGluGlyPheValLeuGlyGlyVal
50196 : GCCTGGAATGGAGGCTTCTCTGGAAACCTGGAAGGAGAAGGCTTTGTCCTCGGGGGAGTT : 50137
192 : PheValValGlySerGlyLysGlnGlyIleLeuLeuGluHisArgGluLysGluPheGly : 211
||||||||||||||||||||||||||||||||||||||||||! !|||||||||||||||
PheValValGlySerGlyLysGlnGlyIleLeuLeuGluHisProGluLysGluPheGly
50136 : TTTGTGGTGGGATCAGGAAAGCAGGGCATTCTTCTCGAACACCCAGAAAAAGAATTTGGA : 50077
212 : AspLysValAsnLeuLeuSerValLeuGluAlaAlaLysMetIleLysProGlnThrLeu : 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AspLysValAsnLeuLeuSerValLeuGluAlaAlaLysMetIleLysProGlnThrLeu
50076 : GACAAAGTAAACCTACTTTCTGTTCTGGAAGCTGCTAAGATGATCAAACCACAGACTTTG : 50017
232 : AlaSerGluGlnLys : 236
|||||||||:!!|||
AlaSerGluLysLys
50016 : GCCTCAGAGAAAAAA : 50000
vulgar: SPP00000371_2.0 11 236 . KV389628.1:subseq(1921457,100722) 50674 49999 - 1128 M 225 675
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389628.1:subseq(1921457,100722) exonerate:protein2genome:local gene 50000 50674 1128 - . gene_id 1 ; sequence SPP00000371_2.0 ; gene_orientation .
KV389628.1:subseq(1921457,100722) exonerate:protein2genome:local cds 50000 50674 . - .
KV389628.1:subseq(1921457,100722) exonerate:protein2genome:local exon 50000 50674 . - . insertions 0 ; deletions 0
KV389628.1:subseq(1921457,100722) exonerate:protein2genome:local similarity 50000 50674 1128 - . alignment_id 1 ; Query SPP00000371_2.0 ; Align 50675 12 675
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis