Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000004_1.0.fa -t ./SPP00000004_1.0/fastasubseq/KV389617.1_fastasubseq.fa]
Hostname: [ws101072u]
C4 Alignment:
------------
Query: SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete
Target: KV389617.1:subseq(1429662,100320) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold191, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 813
Query range: 31 -> 203
Target range: 49805 -> 50320
32 : LeuGlySerLeuArgGlyLysValLeuLeuIleGluAsnValAlaSerLeuUnkGlyThr : 51
|||||||||||||||||||||! !||||||||||||||||||.!!|||||| ||||||
LeuGlySerLeuArgGlyLysGlyLeuLeuIleGluAsnValThrSerLeu***GlyThr
49806 : CTGGGTTCCCTGCGGGGCAAGGGGCTGCTTATCGAGAATGTGACGTCCCTGTGAGGCACC : 49863
52 : ThrValArgAspTyrThrGlnMetAsnGluLeuGlnArgArgLeuGlyProArgGlyLeu : 71
|||||||||||||||||||||||||||! !|||!:!||||||||||||||||||||||||
ThrValArgAspTyrThrGlnMetAsnAlaLeuArgArgArgLeuGlyProArgGlyLeu
49864 : ACGGTCCGGGACTACACCCAGATGAACGCGCTGCGGCGGCGCCTCGGGCCCCGGGGCCTG : 49923
72 : ValValLeuGlyPheProCysAsnGlnPheGlyHisGlnGluAsnAlaLysAsnGluGlu : 91
||||||||||||||||||||||||!!.|||||||||||||||||||||||||||||||||
ValValLeuGlyPheProCysAsnHisPheGlyHisGlnGluAsnAlaLysAsnGluGlu
49924 : GTGGTGCTCGGCTTCCCGTGCAACCACTTTGGACATCAGGAGAACGCCAAGAACGAAGAG : 49983
92 : IleLeuAsnSerLeuLys--TyrValArgProGlyGlyGlyPheGluProAsnPheMetL : 111
||||||||||||||||||## ||||||||||||||||||||||||||||||||||||!
IleLeuAsnSerLeuLys##---ValArgProGlyGlyGlyPheGluProAsnPheMetP
49984 : ATTTTGAATTCCCTCAAGTA---GTCCGACCTGGTGGTGGGTTCGAGCCCAACTTCATGT : 50042
112 : euPheGluLysCysGluValAsnGlyAlaGlyAlaHisProLeuPheAlaPheLeuArgG : 131
!!||||||||||||||||||||||||||||||:!!|||||||||||||||||||||||||
hePheGluLysCysGluValAsnGlyAlaGlySerHisProLeuPheAlaPheLeuArgG
50043 : TCTTCGAGAAGTGCGAGGTGAACGGTGCGGGGTCGCACCCTCTCTTCGCCTTCCTGCGGG : 50102
132 : luAlaLeuProAlaProSerAspAspAlaThrAlaLeuMetThrAspProLysLeuIleT : 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
luAlaLeuProAlaProSerAspAspAlaThrAlaLeuMetThrAspProLysLeuIleT
50103 : AGGCCCTGCCAGCGCCCAGCGACGATGCCACTGCGCTCATGACCGACCCCAAGCTCATCA : 50162
152 : hrTrpSerProValCysArgAsnAspValAlaTrpAsnPheGluLysPheLeuValGlyP : 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
hrTrpSerProValCysArgAsnAspValAlaTrpAsnPheGluLysPheLeuValGlyP
50163 : CCTGGTCTCCGGTATGCCGAAACGATGTTGCATGGAACTTTGAGAAGTTCCTCGTGGGCC : 50222
172 : roAspGlyValProLeuArgArgTyrSerArgArgPheGlnThrIleAspIleGluProA : 191
||||||||||||||:!!|||||||||||||||||||||||||||||||||||||||||||
roAspGlyValProValArgArgTyrSerArgArgPheGlnThrIleAspIleGluProA
50223 : CTGATGGTGTTCCTGTGCGCAGGTACAGCCGCCGCTTCCAGACCATTGACATCGAGCCTG : 50282
192 : spIleGluAlaLeuLeuSerGlnGlyProSerCysAla : 203
||||||||||||||||||||||||||||||||||||||
spIleGluAlaLeuLeuSerGlnGlyProSerCysAla
50283 : ACATCGAAGCCCTACTGTCCCAAGGGCCCAGCTGTGCC : 50320
vulgar: SPP00000004_1.0 31 203 . KV389617.1:subseq(1429662,100320) 49805 50320 + 813 M 66 198 F 0 2 G 1 0 M 105 315
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389617.1:subseq(1429662,100320) exonerate:protein2genome:local gene 49806 50320 813 + . gene_id 1 ; sequence SPP00000004_1.0 ; gene_orientation .
KV389617.1:subseq(1429662,100320) exonerate:protein2genome:local cds 49806 50320 . + .
KV389617.1:subseq(1429662,100320) exonerate:protein2genome:local exon 49806 50320 . + . insertions 0 ; deletions 1 ; frameshifts 2
KV389617.1:subseq(1429662,100320) exonerate:protein2genome:local similarity 49806 50320 813 + . alignment_id 1 ; Query SPP00000004_1.0 ; Align 49806 32 198 ; Align 50006 99 315
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis