Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000359_2.0.fa -t ./SPP00000359_2.0/fastasubseq/KV389606.1_fastasubseq.fa]
Hostname: [ws101092U]
C4 Alignment:
------------
Query: SPP00000359_2.0 # Protein # Selenoprotein I (SELENOI) # Marmoset
Target: KV389606.1:subseq(44514,100272) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold180, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 1966
Query range: 0 -> 379
Target range: 43707 -> 65569
1 : GlnTyrSerAlaValAspThrAsnProLeuSerLeuTyrValMetHisProPheTrpAsn : 20
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlnTyrSerAlaValAspThrAsnProLeuSerLeuTyrValMetHisProPheTrpAsn
43708 : caGTACAGTGCTGTGGACACCAATCCACTTTCTTTGTATGTGATGCATCCATTTTGGAAC : 43765
21 : ThrIleValLys >>>> Target Intron 1 >>>> IlePheProThrTrpLeuA : 31
|||||||||||| 425 bp :!!||||||||||||||||
ThrIleValLys++ ++ValPheProThrTrpLeuA
43766 : ACTATAGTAAAGgt.........................agGTATTTCCTACTTGGCTGG : 44223
32 : laProAsnLeuIleThrPheSerGlyPheLeuLeuValValPheAsnPheLeuLeuMetA : 51
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
laProAsnLeuIleThrPheSerGlyPheLeuLeuValValPheAsnPheLeuLeuMetA
44224 : CTCCCAATCTGATAACTTTTTCTGGCTTTCTGCTGGTTGTATTCAATTTTCTGCTAATGG : 44283
52 : laTyrPheAspProAspPheTyrAlaSer{A} >>>> Target Intron 2 >>>> : 61
|||||||||||||||||||||||||||||{|} 2200 bp
laTyrPheAspProAspPheTyrAlaSer{A}++ +
44284 : CATACTTTGATCCTGACTTTTATGCCTCA{G}gt.........................a : 46512
62 : {la}ProGlyHisLysHisValProAspTrpValTrpIleValValGlyIleLeuAsnP : 80
{||}|||||||||||||||||||||||||||||||||||||||||||||||||||||||
+{la}ProGlyHisLysHisValProAspTrpValTrpIleValValGlyIleLeuAsnP
46513 : g{CA}CCGGGTCACAAGCATGTGCCTGACTGGGTTTGGATTGTAGTGGGCATCCTCAACT : 46570
81 : heValAlaTyrThrLeu{A} >>>> Target Intron 3 >>>> {sp}GlyValA : 89
|||||||||||||||||{|} 3421 bp {||}|||||||
heValAlaTyrThrLeu{A}++ ++{sp}GlyValA
46571 : TTGTAGCCTACACTCTA{G}gt.........................ag{at}GGTGTAG : 50018
90 : spGlyLysGlnAlaArgArgThrAsnSerSerThrProLeuGlyGluLeuPheAspHisG : 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
spGlyLysGlnAlaArgArgThrAsnSerSerThrProLeuGlyGluLeuPheAspHisG
50019 : ACGGAAAGCAAGCTCGGAGAACCAATTCTAGCACTCCCTTAGGGGAGCTTTTTGACCATG : 50078
110 : lyLeuAspSerTrpSerCysValTyrPheValValThrValTyrSerIlePheGlyArgG : 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
lyLeuAspSerTrpSerCysValTyrPheValValThrValTyrSerIlePheGlyArgG
50079 : GCCTGGATAGTTGGTCATGTGTTTACTTTGTTGTAACTGTGTATTCCATCTTTGGAAGAG : 50138
130 : lySerThrGlyValSerValPheValLeuTyrLeuLeuLeuTrpValValLeuPheSerP : 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
lySerThrGlyValSerValPheValLeuTyrLeuLeuLeuTrpValValLeuPheSerP
50139 : GATCAACTGGTGTCAgtgtttttgttctttatctcCTGCTATgggtagttttgttttctt : 50198
150 : heIleLeuSerHisTrpGluLysTyrAsnThrGlyIleLeuPheLeuProTrpGlyTyrA : 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
heIleLeuSerHisTrpGluLysTyrAsnThrGlyIleLeuPheLeuProTrpGlyTyrA
50199 : tcatcctGTCCCATTGGGAAAAGTATAACACGGGGATTCTTTTCCTGCCATGGGGATATG : 50258
170 : spIleSerGlnVal >>>> Target Intron 4 >>>> ThrIleSerPheValTy : 179
|||||||||||||| 1310 bp |||||||||||||||||
spIleSerGlnVal++ ++ThrIleSerPheValTy
50259 : ACATTAGCCAGGTGgt.........................agACTATTTCTTTTGTCTA : 51598
180 : rIleValThrAlaValValGlyValGluAlaTrpTyrGluProPheLeuPheAsnPheLe : 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rIleValThrAlaValValGlyValGluAlaTrpTyrGluProPheLeuPheAsnPheLe
51599 : CATAGTGACTGCGGTTGTGGGAGTTGAGGCCTGGTATGAACCTTTCCTGTTTAATTTCTT : 51658
200 : uTyrArgAspLeuPheThrThrMetIleIle{G} >>>> Target Intron 5 >>> : 210
|||||||||||||||||||||||||||||||{|} 8233 bp
uTyrArgAspLeuPheThrThrMetIleIle{G}++
51659 : ATATAGAGACCTATTCACTACAATGATTATT{G}gt........................ : 51694
211 : > {ly}CysAlaLeuCysValThrLeuProMetSerLeuLeuAsnPhePhe{Ar} >> : 226
{||}|||||||||||||||||||||||||||||||||||||||||||||{||}
++{ly}CysAlaLeuCysValThrLeuProMetSerLeuLeuAsnPhePhe{Ar}++
51695 : .ag{gC}TGTGCATTATGTGTGACTCTTCCAATGAGTTTATTAAACTTTTTC{ag}gt.. : 59976
227 : >> Target Intron 6 >>>> {g}SerTyrLysAsnAsnThrLeuLysHisAsnSe : 237
1415 bp {|}||||||||||||||||||||||||||||||||
++{g}SerTyrLysAsnAsnThrLeuLysHisAsnSe
59977 : .......................ag{a}agctaTAAAAATAACACCTTGAAACACAATTC : 61420
238 : rValTyrGluAlaMetValProPhePheSerProCysLeuLeuPheIleLeuSerThrAl : 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rValTyrGluAlaMetValProPhePheSerProCysLeuLeuPheIleLeuSerThrAl
61421 : AGTCTATGAAGCCATGgttcccttcttttctccatgCTTGCTGTTCATTTTGTCTACAGC : 61480
258 : aTrpIleLeuTrpSerProSerAspIleLeuGluIleHisProArgIlePheTyrPheMe : 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
aTrpIleLeuTrpSerProSerAspIleLeuGluIleHisProArgIlePheTyrPheMe
61481 : GTGGATCCTTTGGTCTCCTTCAGATATTTTAGAGATACATCCTAGAATATTCTACTTTAT : 61540
278 : tValGlyThrAlaPheAlaAsnIleThr >>>> Target Intron 7 >>>> Cys : 287
|||||||||||||||||||||||||||| 1288 bp |||
tValGlyThrAlaPheAlaAsnIleThr++ ++Cys
61541 : GGTTGGAACAGCCTTTGCCAATATCacagt.........................agTGT : 62858
288 : GlnLeuIleValCysGlnMetSerSerThrArgCysProThrLeuAsnTrpLeuLeuVal : 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlnLeuIleValCysGlnMetSerSerThrArgCysProThrLeuAsnTrpLeuLeuVal
62859 : CAGCTGATTGTTTGCCAAATGAGTAGTACCCGGTGTCCAACTTTGAATTGGCTGCTGGTT : 62918
308 : ProLeuPheLeuValValLeuValValAsnLeuGlyValSerSerTyrIleGluSerIle : 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ProLeuPheLeuValValLeuValValAsnLeuGlyValSerSerTyrIleGluSerIle
62919 : CCTCTCTTCTTGGTTGTCTTAGTGGTAAACTTAGGAGTGTCCTCTTACATTGAGAGCATT : 62978
328 : IleLeuTyrThrLeuThrThrAlaPheThrLeuAlaHisIleHisTyrGlyValArgVal : 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IleLeuTyrThrLeuThrThrAlaPheThrLeuAlaHisIleHisTyrGlyValArgVal
62979 : ATCCTATATACATTAACAACTGCTTTCACTCTGGCCCACATCCATTATGGAGTACGAGTG : 63038
348 : >>>> Target Intron 8 >>>> ValLysGlnLeuSerSerHisPheGlnIleT : 358
2433 bp |||||||||||||||||||||||||||||||
++ ++ValLysGlnLeuSerSerHisPheGlnIleT
63039 : gt.........................agGTAAAGCAGCTGAGCAGCCATTTTCAGATTT : 65504
359 : yrProPheSerLeuArgLysProAsnSerAspUnkLeuGlyMetGluGluLysAsnIleG : 378
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
yrProPheSerLeuArgLysProAsnSerAsp***LeuGlyMetGluGluLysAsnIleG
65505 : ACCCCTTCTCATTGAGGAAACCAAACTCAGATTGACTaggaatggaagaaaagaatattg : 65564
379 : lyLeu : 379
|||||
lyLeu
65565 : gcctg : 65569
vulgar: SPP00000359_2.0 0 379 . KV389606.1:subseq(44514,100272) 43707 65569 + 1966 M 24 72 5 0 2 I 0 421 3 0 2 M 36 108 S 0 1 5 0 2 I 0 2196 3 0 2 S 1 2 M 24 72 S 0 1 5 0 2 I 0 3417 3 0 2 S 1 2 M 87 261 5 0 2 I 0 1306 3 0 2 M 36 108 S 0 1 5 0 2 I 0 8229 3 0 2 S 1 2 M 15 45 S 0 2 5 0 2 I 0 1411 3 0 2 S 1 1 M 60 180 5 0 2 I 0 1284 3 0 2 M 61 183 5 0 2 I 0 2429 3 0 2 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local gene 43708 65569 1966 + . gene_id 1 ; sequence SPP00000359_2.0 ; gene_orientation +
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local cds 43708 43779 . + .
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local exon 43708 43779 . + . insertions 0 ; deletions 0
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice5 43780 43781 . + . intron_id 1 ; splice_site "GT"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local intron 43780 44204 . + . intron_id 1
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice3 44203 44204 . + . intron_id 0 ; splice_site "ag"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local cds 44205 44313 . + .
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local exon 44205 44313 . + . insertions 0 ; deletions 0
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice5 44314 44315 . + . intron_id 2 ; splice_site "GT"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local intron 44314 46513 . + . intron_id 2
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice3 46512 46513 . + . intron_id 1 ; splice_site "AG"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local cds 46514 46588 . + .
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local exon 46514 46588 . + . insertions 0 ; deletions 0
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice5 46589 46590 . + . intron_id 3 ; splice_site "GT"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local intron 46589 50009 . + . intron_id 3
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice3 50008 50009 . + . intron_id 2 ; splice_site "ag"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local cds 50010 50272 . + .
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local exon 50010 50272 . + . insertions 0 ; deletions 0
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice5 50273 50274 . + . intron_id 4 ; splice_site "GT"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local intron 50273 51582 . + . intron_id 4
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice3 51581 51582 . + . intron_id 3 ; splice_site "AG"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local cds 51583 51691 . + .
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local exon 51583 51691 . + . insertions 0 ; deletions 0
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice5 51692 51693 . + . intron_id 5 ; splice_site "GT"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local intron 51692 59924 . + . intron_id 5
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice3 59923 59924 . + . intron_id 4 ; splice_site "ag"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local cds 59925 59973 . + .
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local exon 59925 59973 . + . insertions 0 ; deletions 0
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice5 59974 59975 . + . intron_id 6 ; splice_site "gt"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local intron 59974 61388 . + . intron_id 6
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice3 61387 61388 . + . intron_id 5 ; splice_site "ag"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local cds 61389 61569 . + .
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local exon 61389 61569 . + . insertions 0 ; deletions 0
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice5 61570 61571 . + . intron_id 7 ; splice_site "gt"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local intron 61570 62857 . + . intron_id 7
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice3 62856 62857 . + . intron_id 6 ; splice_site "AG"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local cds 62858 63040 . + .
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local exon 62858 63040 . + . insertions 0 ; deletions 0
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice5 63041 63042 . + . intron_id 8 ; splice_site "GT"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local intron 63041 65473 . + . intron_id 8
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local splice3 65472 65473 . + . intron_id 7 ; splice_site "AG"
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local cds 65474 65569 . + .
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local exon 65474 65569 . + . insertions 0 ; deletions 0
KV389606.1:subseq(44514,100272) exonerate:protein2genome:local similarity 43708 65569 1966 + . alignment_id 1 ; Query SPP00000359_2.0 ; Align 43708 1 72 ; Align 44205 25 108 ; Align 46516 62 72 ; Align 50012 87 261 ; Align 51583 174 108 ; Align 59927 211 45 ; Align 61390 227 180 ; Align 62858 287 183 ; Align 65474 348 96
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis