Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000354_2.0.fa -t ./SPP00000354_2.0/fastasubseq/KV389556.1_fastasubseq.fa]
Hostname: [ws101092U]
C4 Alignment:
------------
Query: SPP00000354_2.0 # Protein # Selenoprotein K (SELENOK) # Marmoset
Target: KV389556.1:subseq(4282355,100212) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold130, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 374
Query range: 1 -> 84
Target range: 50212 -> 49960
2 : ValGlyGluGlnSerSerSerProTrpLysLeuProLeuIleAlaAspPhePhe<->Arg : 20
:!!|||||||||||||||||||||||||||||| !!||||||.!!||||||||| |||
LeuGlyGluGlnSerSerSerProTrpLysLeuSerLeuIleThrAspPhePhe***Arg
50212 : TTGGGAGAGCAGAGCTCATCTCCATGGAAATTATCTTTGATAACAGATTTTTTCTGAAGG : 50155
21 : IleAlaLysPheValValLeuPhePheLysThrLeuLeuGlnGlnHisValLysLysArg : 40
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IleAlaLysPheValValLeuPhePheLysThrLeuLeuGlnGlnHisValLysLysArg
50154 : ATAGCCAagtttgtggttttgtttttcaaaactctACTTCAACAACATGTGAAAAAAAGA : 50095
41 : ArgGlyGluAsnSerSerAspSerArgAsnAspAsnGlyArgTrpProProGlySerPro : 60
!! !||||||||||||||||||||| !!|||||| !!|||||||||||||||||||||
GlyTyrGluAsnSerSerAspSerArgTyrAspAsnArgArgTrpProProGlySerPro
50094 : GGCTACGAAAACTCATCTGATTCCAGATATGATAATAGAAGATGGCCACCAGGAAGCCCT : 50035
61 : ProGlyLysLysGlyGlnIleAsnHisLeuHisGlyProSerProProProLysAlaGly : 80
|||||||||! !||||||||||||||||||||||||||||||||||||||||||||||||
ProGlyLysThrGlyGlnIleAsnHisLeuHisGlyProSerProProProLysAlaGly
50034 : CCAGGAAAAACAGGTCAAATCAATCATCTTCATGGCCCCAGTCCTCCTCCAAAGGCTGGT : 49975
81 : GlyUnkGlyArg : 84
||| ||||||
Gly***GlyArg
49974 : GGATGAGGAAGG : 49961
vulgar: SPP00000354_2.0 1 84 . KV389556.1:subseq(4282355,100212) 50212 49960 - 374 M 18 54 G 0 3 M 65 195
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389556.1:subseq(4282355,100212) exonerate:protein2genome:local gene 49961 50212 374 - . gene_id 1 ; sequence SPP00000354_2.0 ; gene_orientation .
KV389556.1:subseq(4282355,100212) exonerate:protein2genome:local cds 49961 50212 . - .
KV389556.1:subseq(4282355,100212) exonerate:protein2genome:local exon 49961 50212 . - . insertions 3 ; deletions 0
KV389556.1:subseq(4282355,100212) exonerate:protein2genome:local similarity 49961 50212 374 - . alignment_id 1 ; Query SPP00000354_2.0 ; Align 50213 2 54 ; Align 50156 20 195
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis