Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000332_2.0.fa -t ./SPP00000332_2.0/fastasubseq/KV389551.1_fastasubseq.fa]
Hostname: [ws101072u]

C4 Alignment:
------------
         Query: SPP00000332_2.0 # Protein # Methionine sulfoxide reductase A (MsrA) # Marmoset 
        Target: KV389551.1:subseq(3728965,100164) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold125, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 298
   Query range: 162 -> 217
  Target range: 49999 -> 50164

   163 : LysValLeuSerGluHisGlyPheGlyProIleThrThrAspIleArgGluArgGlnThr :   182
         :!!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlnValLeuSerGluHisGlyPheGlyProIleThrThrAspIleArgGluArgGlnThr
 50000 : CAGGTTCTTTCTGAGCACGGCTTCGGCCCCATCACTACCGACATCCGGGAGAGACAGACT : 50057

   183 : PheTyrTyrAlaGluAspTyrHisGlnGlnTyrLeuSerLysAsnProAsnGlyTyrCys :   202
         ||||||||||||||||||||||||||||||||||||||||||||||||:!!|||||||||
         PheTyrTyrAlaGluAspTyrHisGlnGlnTyrLeuSerLysAsnProAspGlyTyrCys
 50058 : TTCTACTACGCGGAAGACTACCACCAGCAGTACCTGAGCAAGAACCCCGATGGCTACTGT : 50117

   203 : GlyLeuGlyGlyThrGlyValSerCysProMetGlyIleLysLys :   217
         |||||||||||||||||||||||||||||||||||||||||||||
         GlyLeuGlyGlyThrGlyValSerCysProMetGlyIleLysLys
 50118 : GGCCTGGGGGGCACCGGCGTGTCCTGCCCAATgggtattaaaaaa : 50164

vulgar: SPP00000332_2.0 162 217 . KV389551.1:subseq(3728965,100164) 49999 50164 + 298 M 55 165
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389551.1:subseq(3728965,100164)	exonerate:protein2genome:local	gene	50000	50164	298	+	.	gene_id 1 ; sequence SPP00000332_2.0 ; gene_orientation .
KV389551.1:subseq(3728965,100164)	exonerate:protein2genome:local	cds	50000	50164	.	+	.	
KV389551.1:subseq(3728965,100164)	exonerate:protein2genome:local	exon	50000	50164	.	+	.	insertions 0 ; deletions 0
KV389551.1:subseq(3728965,100164)	exonerate:protein2genome:local	similarity	50000	50164	298	+	.	alignment_id 1 ; Query SPP00000332_2.0 ; Align 50000 163 165
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis