Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000365_2.0.fa -t ./SPP00000365_2.0/fastasubseq/KV389518.1_fastasubseq.fa]
Hostname: [ws101092U]
C4 Alignment:
------------
Query: SPP00000365_2.0 # Protein # Methionine-R-sufoxide reductase 2 (MSRB2) # Marmoset
Target: KV389518.1:subseq(12414892,100149) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold92, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 737
Query range: 0 -> 155
Target range: 99992 -> 48625
1 : GluThrArgLeuAlaTyrMetValLysProValSerThrLysAsnThrLysAsnThrLys : 20
|||||| |||||| |||||||||||||||||| |||||||||||||||
GluThrSerLeuAlaAsnMetValLysProValSer---------ThrLysAsnThrLys
99992 : gaaaccagcctggccaacatggtgaaacccgtctct---------actaaaaatacaaaa : 99944
21 : AsnLysLysProGlyLys >>>> Target Intron 1 >>>> SerGluTrpGlnL : 31
|||||||||||||||||| 38659 bp |||||||||||||
AsnLysLysProGlyLys++ ++SerGluTrpGlnL
99943 : aataaaaagccaggcaaggt.........................agAGTGAGTGGCAAA : 61252
32 : ysLysLeuThrProGluGlnSerTyrValThrArgGluLysGlyThrGluPro >>>> : 49
||||||||||||||||||||! !||||||||||||||||||||||||||||||
ysLysLeuThrProGluGlnPheTyrValThrArgGluLysGlyThrGluPro++
61251 : AGAAACTAACCCCAGAGCAATTCTACGTCACCAGAGAAAAGGGAACGGAACCGgt..... : 61196
50 : Target Intron 2 >>>> ProPheSerGlyIleTyrLeuAsnAsnLysGluAlaGl : 61
2800 bp ||||||||||||||||||||||||||||||||||||||
++ProPheSerGlyIleTyrLeuAsnAsnLysGluAlaGl
61195 : ....................agCCTTTCAGTGGGATCTACCTGAATAACAAGGAAGCAGG : 58362
62 : yMetTyrHisCysValCysCysAspSerProLeuPhe{Se} >>>> Target Intro : 74
|||||||||||||||||||||||||!:!|||||||||{||} 8174 bp
yMetTyrHisCysValCysCysAspAsnProLeuPhe{Se}++
58361 : AATGTACCACTGCGTGTGCTGCGATAATCCACTCTTC{AG}gt................. : 58319
75 : n 3 >>>> {r}SerGluLysLysTyrCysSerGlyThrGlyTrpProSerPheSerGl : 90
{|}|||||||||||||||||||||||||||||||||||||||||||||||
++{r}SerGluLysLysTyrCysSerGlyThrGlyTrpProSerPheSerGl
58318 : ........ag{T}TCTGAGAAAAAGTACTGCTCTGGCACCGGGTGGCCTTCGTTTTCTGA : 50101
91 : uAlaHisGlyThrSerGlySerAspGluSerHisThrGlyIleLeuArgArgLeuAspTh : 110
||||||||||||||||||||||||||||||||||.!!|||||||||||||||||||||||
uAlaHisGlyThrSerGlySerAspGluSerHisAlaGlyIleLeuArgArgLeuAspTh
50100 : GGCTCATGGTACGTCTGGCTCTGATGAAAGCCACGCAGGGATCCTGAGACGTCTGGACAC : 50041
111 : rSerLeuGlySerAlaArgThrGluValValCysLysGln >>>> Target Intron : 124
|||||||||||||||||||||||||||||||||||||||| 1278 bp
rSerLeuGlySerAlaArgThrGluValValCysLysGln++
50040 : CTCGTTAGGATCCGCTCGCACAGAGGTCGTCTGCAAGCAGgt.................. : 49997
125 : 4 >>>> CysGluAlaHisLeuGlyHisValPheProAspGlyProGlyProAsnGly : 140
|||||||||||||||||||||||||||||||||||||||||||||||||||
++CysGluAlaHisLeuGlyHisValPheProAspGlyProGlyProAsnGly
49996 : .......agTGTGAAGCTCATCTTGGTCACGTGTTTCCTGATGGACCTGGGCCCAACGGT : 48673
141 : GlnArgPheCysIleAsnSerValAlaLeuLysPheLysProArg : 155
|||||||||||||||||||||:!!|||||||||||||||||||||
GlnArgPheCysIleAsnSerLeuAlaLeuLysPheLysProArg
48672 : CAGAGGTTTTGCATCAACAGTCTGGCTCTGAAGTTCAAACCCAGG : 48626
vulgar: SPP00000365_2.0 0 155 . KV389518.1:subseq(12414892,100149) 99992 48625 - 737 M 12 36 G 3 0 M 11 33 5 0 2 I 0 38655 3 0 2 M 22 66 5 0 2 I 0 2796 3 0 2 M 25 75 S 0 2 5 0 2 I 0 8170 3 0 2 S 1 1 M 49 147 5 0 2 I 0 1274 3 0 2 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local gene 48626 99992 737 - . gene_id 1 ; sequence SPP00000365_2.0 ; gene_orientation +
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local cds 99924 99992 . - .
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local exon 99924 99992 . - . insertions 0 ; deletions 3
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local splice5 99922 99923 . - . intron_id 1 ; splice_site "gt"
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local intron 61265 99923 . - . intron_id 1
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local splice3 61265 61266 . - . intron_id 0 ; splice_site "AG"
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local cds 61199 61264 . - .
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local exon 61199 61264 . - . insertions 0 ; deletions 0
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local splice5 61197 61198 . - . intron_id 2 ; splice_site "GT"
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local intron 58399 61198 . - . intron_id 2
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local splice3 58399 58400 . - . intron_id 1 ; splice_site "AG"
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local cds 58322 58398 . - .
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local exon 58322 58398 . - . insertions 0 ; deletions 0
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local splice5 58320 58321 . - . intron_id 3 ; splice_site "GT"
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local intron 50148 58321 . - . intron_id 3
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local splice3 50148 50149 . - . intron_id 2 ; splice_site "AG"
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local cds 50000 50147 . - .
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local exon 50000 50147 . - . insertions 0 ; deletions 0
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local splice5 49998 49999 . - . intron_id 4 ; splice_site "GT"
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local intron 48722 49999 . - . intron_id 4
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local splice3 48722 48723 . - . intron_id 3 ; splice_site "AG"
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local cds 48626 48721 . - .
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local exon 48626 48721 . - . insertions 0 ; deletions 0
KV389518.1:subseq(12414892,100149) exonerate:protein2genome:local similarity 48626 99992 737 - . alignment_id 1 ; Query SPP00000365_2.0 ; Align 99993 1 36 ; Align 99957 16 33 ; Align 61265 27 66 ; Align 58399 49 75 ; Align 50147 75 147 ; Align 48722 124 96
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis