Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000382_2.0.fa -t ./SPP00000382_2.0/fastasubseq/KV389513.1_fastasubseq.fa]
Hostname: [ws101092U]

C4 Alignment:
------------
         Query: SPP00000382_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Marmoset 
        Target: KV389513.1:subseq(6318282,100164) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold87, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 262
   Query range: 0 -> 80
  Target range: 39851 -> 50797

     1 : GlyMetValAlaSerLeuTrpMetGlyAsp  >>>> Target Intron 1 >>>>  L :    11
         ||||||!.!|||||||||||||||||||||            520 bp            
         GlyMetAlaAlaSerLeuTrpMetGlyAsp++                         +-G
 39852 : GGCATGGCGGCCAGCCTGTGGATGGGCGACgt.........................atG : 40402

    12 : euGluProTyrMetAspGluAsnPheLeuMetGlyGluThrValMetSerIleLysPheI :    31
          !.!.  !  !      !    !  !  !|||||||||||||||||||||:!!|||.!!|
         luAsnPheIleSerArgAlaPheAlaThrMetGlyGluThrValMetSerValLysIleI
 40403 : AGAACTTCATCTCCAGAGCCTTTGCCACCATGGGGGAGACTGTAATGAGCGTCAAAATTA : 40462

    32 : le<->AsnArgLeuThr{Gl}  >>>> Target Intron 2 >>>>  {y}IleProA :    39
         ||   ||||||||||||{||}           9568 bp           {|}|||||||
         leArgAsnArgLeuThr{Gl}++                         ++{y}IleProA
 40463 : TCCGAAACCGCCTCACC{GG}gt.........................ag{G}ATCCCAG : 50057

    40 : laGlyTyrCysPheValGlu<->AlaAspLeuValThrAlaGluLysCysLeuHisLysI :    58
         ||||||||||||||||||||   |||||||||!.!|||||||||||||||||||||||||
         laGlyTyrCysPheValGluPheAlaAspLeuAlaThrAlaGluLysCysLeuHisLysI
 50058 : CTGGCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAA : 50117

    59 : leAsnGlyLysProLeuProGlyAlaThrPro  >>>> Target Intron 3 >>>>  :    69
         ||||||||||||||||||||||||||||||||            612 bp          
         leAsnGlyLysProLeuProGlyAlaThrPro++                         +
 50118 : TTAATGGGAAACCCCTTCCAGGAGCCACACCTgt.........................a : 50760

    70 :  ValLysArgPheLysLeuAsnTyrAlaThrTyrGly :    80
          ..!|||||||||||||||||||||||||||||||||
         +AlaLysArgPheLysLeuAsnTyrAlaThrTyrGly
 50761 : ggcGAAACGTTTTAAACTCAACTATGCCACTTATGGG : 50797

vulgar: SPP00000382_2.0 0 80 . KV389513.1:subseq(6318282,100164) 39851 50797 + 262 M 10 30 5 0 2 I 0 516 3 0 2 M 21 63 G 0 3 M 4 12 S 0 2 5 0 2 I 0 9564 3 0 2 S 1 1 M 9 27 G 0 3 M 23 69 5 0 2 I 0 608 3 0 2 M 12 36
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	gene	39852	50797	262	+	.	gene_id 1 ; sequence SPP00000382_2.0 ; gene_orientation +
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	cds	39852	39881	.	+	.	
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	exon	39852	39881	.	+	.	insertions 0 ; deletions 0
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	splice5	39882	39883	.	+	.	intron_id 1 ; splice_site "GT"
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	intron	39882	40401	.	+	.	intron_id 1
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	splice3	40400	40401	.	+	.	intron_id 0 ; splice_site "AT"
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	cds	40402	40481	.	+	.	
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	exon	40402	40481	.	+	.	insertions 3 ; deletions 0
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	splice5	40482	40483	.	+	.	intron_id 2 ; splice_site "GT"
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	intron	40482	50049	.	+	.	intron_id 2
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	splice3	50048	50049	.	+	.	intron_id 1 ; splice_site "ag"
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	cds	50050	50149	.	+	.	
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	exon	50050	50149	.	+	.	insertions 3 ; deletions 0
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	splice5	50150	50151	.	+	.	intron_id 3 ; splice_site "GT"
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	intron	50150	50761	.	+	.	intron_id 3
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	splice3	50760	50761	.	+	.	intron_id 2 ; splice_site "ag"
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	cds	50762	50797	.	+	.	
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	exon	50762	50797	.	+	.	insertions 0 ; deletions 0
KV389513.1:subseq(6318282,100164)	exonerate:protein2genome:local	similarity	39852	50797	262	+	.	alignment_id 1 ; Query SPP00000382_2.0 ; Align 39852 1 30 ; Align 40402 11 63 ; Align 40468 32 12 ; Align 50051 37 27 ; Align 50081 46 69 ; Align 50762 69 36
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis