Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000363_2.0.fa -t ./SPP00000363_2.0/fastasubseq/KV389506.1_fastasubseq.fa]
Hostname: [ws101092U]
C4 Alignment:
------------
Query: SPP00000363_2.0 # Protein # Selenoprotein P (SELENOP) # Marmoset
Target: KV389506.1:subseq(2207742,100551) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold80, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 1796
Query range: 0 -> 381
Target range: 56210 -> 49942
1 : MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProSerGlyGlyThrGlu : 20
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProSerGlyGlyThrGlu
56210 : ATGTGGAGAAGCCTGGGGCTTGCCCTGGctctctgtctcctcccctcAGGAGGAACAGAG : 56153
21 : SerGlnAspGlnSerSerSerCysLysHisProProAlaTrpSerIleArgAspGlnAsp : 40
||||||||||||||||||! !||||||!!.||||||||||||||||||||||||||||||
SerGlnAspGlnSerSerLeuCysLysGlnProProAlaTrpSerIleArgAspGlnAsp
56152 : AGCCAGGACCAAAGCTCCTTATGTAAGCAACCCCCAGCCTGGAGCATAAGAGATCAAGAT : 56093
41 : ProMetLeuAsnSerSerGlySerValThrValValAlaLeuLeuGlnAlaSerUnkTyr : 60
|||||||||||||||!!!|||||||||||||||||||||||||||||||||||| |||
ProMetLeuAsnSerThrGlySerValThrValValAlaLeuLeuGlnAlaSer***Tyr
56092 : CCAATGCTGAACTCCACTGGTTCAGTGACTGTGGTTGCTCTTCTTCAAGCCAGTTGATAC : 56033
61 : LeuCysIleLeuGlnAlaSer{Ar} >>>> Target Intron 1 >>>> {g}Leu : 69
|||||||||||||||||||||{||} 1063 bp {|}|||
LeuCysIleLeuGlnAlaSer{Ar}++ ++{g}Leu
56032 : CTGTGCATTCTGCAGGCATCT{AG}gt.........................ag{A}TTG : 54943
70 : GluAspLeuArgValLysLeuGluLysGluGlyTyrSerAsnIleSerTyrIleIleVal : 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GluAspLeuArgValLysLeuGluLysGluGlyTyrSerAsnIleSerTyrIleIleVal
54942 : GAAGACCTGCGAGTAAAACTGGAGAAAGAAGGATATTctaatatttcttatattattgTT : 54883
90 : AsnHisGlnGlyLeuSerSerGlnLeuArgTyrThrHisLeuLysAsnGlnValSerGlu : 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AsnHisGlnGlyLeuSerSerGlnLeuArgTyrThrHisLeuLysAsnGlnValSerGlu
54882 : AATCATCAAGGACTCTCTTCTCAATTAAGATACACACATCTTAAGAATCAGGTTTCAGAG : 54823
110 : HisIleProValTyrGlnGlnGluGluAsnGlnProAspValTrpThrLeuLeuAsnGly : 129
|||||||||||||||||||||||||||||||||||||||||||||.!!||||||||||||
HisIleProValTyrGlnGlnGluGluAsnGlnProAspValTrpAlaLeuLeuAsnGly
54822 : CATATTCCTGTTTATCAGCAAGAAGAAAACCAACCAGATGTCTGGGCTCttttaaatgga : 54763
130 : AsnLysAspAspPheLeuIleTyrAsp{Ar} >>>> Target Intron 2 >>>> : 139
|||||||||||||||||||||||||||{||} 2125 bp
AsnLysAspAspPheLeuIleTyrAsp{Ar}++ ++
54762 : aacaaagaTGACTTCCTCATATATGAC{AG}gt.........................ag : 52608
140 : {g}CysGlyArgLeuValTyrHisLeuGlyLeuProPheSerPheLeuThrPheProTyr : 158
{|}|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
{g}CysGlyArgLeuValTyrHisLeuGlyLeuProPheSerPheLeuThrPheProTyr
52607 : {A}TGTGGCCGTCTTGTATATCATCTTGGTTTGCCTTTTTCCTTCCTAACATTCCCATAT : 52551
159 : ValGluGluAlaIleLysIleAlaTyrCysGluLysLysCysGlyAsnCysProLeuThr : 178
||||||||||||||||||||||||||||||||||||||||||||||||||| !!||||||
ValGluGluAlaIleLysIleAlaTyrCysGluLysLysCysGlyAsnCysSerLeuThr
52550 : GTAGAAGAAGCCATTAAGATTGCTTACTGTGAAAAGAAATGTGGAAACTGCTCTCTCACg : 52491
179 : >>>> Target Intron 3 >>>> ThrLeuAsnAspGluAspPheCysLysAsnV : 189
1937 bp ||||||!!.||||||||||||||||||||||
++ ++ThrLeuLysAspGluAspPheCysLysAsnV
52490 : gt.........................agACTCTCAAAGATGAAGACTTTTGTAAAAATG : 50521
190 : alSerLeuAlaThrValAsnLysThrThrGluAlaProGlnProHisHisHisHisLysH : 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
alSerLeuAlaThrValAsnLysThrThrGluAlaProGlnProHisHisHisHisLysH
50520 : TAtctttggctactgtgaataaaacAACTGAAGCTCCACAGCCCCATCACCATCATAAGC : 50461
210 : isHisHisAsnHisArgHisGlnHisLeuGlySerSerGluLeuSerLysAsnGlnGlnP : 229
|||||!.!|||||| !!|||||||||||||||||||||||||||||||||||||||||||
isHisArgAsnHisGlyHisGlnHisLeuGlySerSerGluLeuSerLysAsnGlnGlnP
50460 : ATCATCGCAATCATGGACATCAGCACCTTGGCAGCAGTGAGCTTTCAAAGAATCAGCAAC : 50401
230 : roGlyAlaProAspAlaProThrHisLeuThrProLeuAspLeuTyrHisHisHisLysH : 249
|||||||||||||||||||||||||||||||||||! !||||||:!!|||||||||||||
roGlyAlaProAspAlaProThrHisLeuThrProSerAspLeuHisHisHisHisLysH
50400 : CAGGAGCACCAGATGCTCCTACTCATCTCACTCCTTCAGATCTTCATCACCACCATAAGC : 50341
250 : isLysGlyGlnHisArgGlnGlyHisProGluAsnUnkTyrMetProGlySerGluGlyL : 269
||||||||||||||||||||||||||||||||||| |||!!:||||||||||||||||
isLysGlyGlnHisArgGlnGlyHisProGluAsn***TyrIleProGlySerGluGlyL
50340 : ACAAGGGTCAACATAGGCAGGGTCACCCAGAGAACTGATATATACCAGGAAGTGAAGGTT : 50281
270 : euGlnHisProArgAsnLysLeuUnkGlnArgArgCysIleAsnGlnLeuLeuUnkLysL : 289
||||||||||||||||||||||| |||!:!||||||||||||||||||||| ||||
euGlnHisProArgAsnLysLeu***GlnLysArgCysIleAsnGlnLeuLeu***LysL
50280 : TACAACATCCACGAAACAAGCTCTGACAAAAGAGATGTATAAATCAATTACTCTGAAAAT : 50221
290 : euProLysAspSerGluLeuAlaProArgSerUnkCysUnkHisCysArgHisLeuIleP : 309
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
euProLysAspSerGluLeuAlaProArgSer***Cys***HisCysArgHisLeuIleP
50220 : TGCCCAAAGATTCAGAGTTGGCTCCTAGGAGCTGATGCTGACATTGTCGACATCTGATAT : 50161
310 : heGluLysThrGlySerAlaIleThrUnkGlnCysLysGluAsnLeuProSerLeuCysS : 329
|||||||||||||||||||||||||| ||||||! !||||||||||||||||||||||
heGluLysThrGlySerAlaIleThr***GlnCysThrGluAsnLeuProSerLeuCysS
50160 : TTGAAAAAACGGGGTCTGCAATCACCTGACAGTGTACAGAAAACCTTCCATCTTTATGTA : 50101
330 : erUnkGlnGlyLeuArgAlaGluGluAsnIleThrGluSerCysGlnUnkArgLeuProP : 349
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
er***GlnGlyLeuArgAlaGluGluAsnIleThrGluSerCysGln***ArgLeuProP
50100 : GCTGACAGGGACTTCGGGCAGAGGAGAATATAACTGAATCTTGTCAGTGACGTTTGCCTC : 50041
350 : roAlaAlaUnkGlnThrSerGlnGlnLeuIleProThrGluAlaSerThrAsnUnkSerU : 369
|||||||| :!!||||||||||||||||||||||||||||||||||||||| |||
roAlaAla***LysThrSerGlnGlnLeuIleProThrGluAlaSerThrAsn***Ser*
50040 : CAGCTGCCTGAAAGACAAGTCAGCAGCTTATACCTACAGAAGCCAGTACCAATTGAAGCT : 49981
370 : nkLysAsnLysAlaLysLysUnkGluCysSerSerAsn : 381
||||||! !||||||||| |||!! !!||||||
**LysAsnMetAlaLysLys***Glu***ProSerAsn
49980 : GAAAGAATATGGCAAAAAAGTGAGAATGACCTtcaaac : 49943
vulgar: SPP00000363_2.0 0 381 . KV389506.1:subseq(2207742,100551) 56210 49942 - 1796 M 67 201 S 0 2 5 0 2 I 0 1059 3 0 2 S 1 1 M 70 210 S 0 2 5 0 2 I 0 2121 3 0 2 S 1 1 M 39 117 5 0 2 I 0 1933 3 0 2 M 203 609
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local gene 49943 56210 1796 - . gene_id 1 ; sequence SPP00000363_2.0 ; gene_orientation +
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local cds 56008 56210 . - .
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local exon 56008 56210 . - . insertions 0 ; deletions 0
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local splice5 56006 56007 . - . intron_id 1 ; splice_site "GT"
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local intron 54945 56007 . - . intron_id 1
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local splice3 54945 54946 . - . intron_id 0 ; splice_site "AG"
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local cds 54732 54944 . - .
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local exon 54732 54944 . - . insertions 0 ; deletions 0
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local splice5 54730 54731 . - . intron_id 2 ; splice_site "Gt"
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local intron 52607 54731 . - . intron_id 2
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local splice3 52607 52608 . - . intron_id 1 ; splice_site "AG"
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local cds 52489 52606 . - .
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local exon 52489 52606 . - . insertions 0 ; deletions 0
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local splice5 52487 52488 . - . intron_id 3 ; splice_site "gt"
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local intron 50552 52488 . - . intron_id 3
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local splice3 50552 50553 . - . intron_id 2 ; splice_site "AG"
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local cds 49943 50551 . - .
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local exon 49943 50551 . - . insertions 0 ; deletions 0
KV389506.1:subseq(2207742,100551) exonerate:protein2genome:local similarity 49943 56210 1796 - . alignment_id 1 ; Query SPP00000363_2.0 ; Align 56211 1 201 ; Align 54944 69 210 ; Align 52606 140 117 ; Align 50552 179 609
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis