Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000312_2.0.fa -t ./SPP00000312_2.0/fastasubseq/KV389500.1_fastasubseq.fa]
Hostname: [ws101073u]
C4 Alignment:
------------
Query: SPP00000312_2.0 # Protein # Glutathione peroxidase 2 (GPx2) # Marmoset
Target: KV389500.1:subseq(688484,100443) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold74, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 728
Query range: 42 -> 190
Target range: 49999 -> 50443
43 : ThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPheProArgArgLeuVal : 62
.!!||||||||||||||||||||||||||||||||||||||||||||||||!.!||||||
AlaThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPheProArgHisLeuVal
50000 : GCCACCCGGGACTTCACCCAGCTCAACGAGCTGCAATGCCGCTTTCCCCGGCACCTGGTG : 50057
63 : ValLeuGlyPheProCysAsnGlnPheGlyHisGlnGluAsnCysGlnAsnGluGluIle : 82
||||||! !||||||||||||||||||||||||||||||||| !!|||||||||||||||
ValLeuAspPheProCysAsnGlnPheGlyHisGlnGluAsnGlyGlnAsnGluGluIle
50058 : GTCCTTGACTTCCCTTGCAACCAATTTGGACATCAGGAGAACGGTCAGAATGAGGAGATC : 50117
83 : LeuAsnSerLeuLysTyrValArgProGlyGlyGlyTyrGlnProThrPheThrLeuVal : 102
|||||||||||||||||||||!.! !!|||||||||||||||||||||||||||||||||
LeuAsnSerLeuLysTyrValHisSerGlyGlyGlyTyrGlnProThrPheThrLeuVal
50118 : CTGAACAGTCTCAAGTATGTCCACTCTGGGGGTGGATACCAGCCCACCTTCACCCTTGTC : 50177
103 : GlnLysCysGluValAsnGlyGlnAsnGluHisProValPheAlaTyrLeuLysAspLys : 122
||||||||||||||||||||||||||||||!.!|||||||||||||||||||||||||||
GlnLysCysGluValAsnGlyGlnAsnGluArgProValPheAlaTyrLeuLysAspLys
50178 : CAAAAATGTGAGGTGAATGGGCAGAACGAGCGTCCTGTCTTCGCCTATCTGAAGGACAAG : 50237
123 : LeuProTyrProTyrAspAspProPheSerLeuMetThrAspProLysPheIleIleTrp : 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||! !|||
LeuProTyrProTyrAspAspProPheSerLeuMetThrAspProLysPheIleThrTrp
50238 : CTCCCCTACCCTTATGATGACCCCTTTTCCCTCATGACCGATCCCAAGTTCATCACTTGG : 50297
143 : SerProValArgArgSerAspValAlaTrpAsnPheGluLysPheLeuIleGlyProGlu : 162
||||||:!! !!|||||||||||||||! !||||||||||||||||||||||||||||||
SerProLeuCysArgSerAspValAla***AsnPheGluLysPheLeuIleGlyProGlu
50298 : AGCCCCTTGTGCCGCTCAGATGTGGCCTAGAACTTTGAGAAGTTCCTCATAGGGCCGGAG : 50357
163 : GlyGluProPheArgArgTyrSerArgThrPheProThrIleAsnIleGluProAspIle : 182
|||||||||||||||||||||||||||||||||||||||||||||!!:||||||||||||
GlyGluProPheArgArgTyrSerArgThrPheProThrIleAsnMetGluProAspIle
50358 : GGAGAGCCCTTCCGACGCTACAGCCGCACCTTCCCAACCATCAACATGGAGCCTGACATC : 50417
183 : LysArgLeuLeuLysValAlaIle : 190
||||||||||||||||||||||||
LysArgLeuLeuLysValAlaIle
50418 : AAGCGCCTCCTTAAAGTTGCCATA : 50443
vulgar: SPP00000312_2.0 42 190 . KV389500.1:subseq(688484,100443) 49999 50443 + 728 M 148 444
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389500.1:subseq(688484,100443) exonerate:protein2genome:local gene 50000 50443 728 + . gene_id 1 ; sequence SPP00000312_2.0 ; gene_orientation .
KV389500.1:subseq(688484,100443) exonerate:protein2genome:local cds 50000 50443 . + .
KV389500.1:subseq(688484,100443) exonerate:protein2genome:local exon 50000 50443 . + . insertions 0 ; deletions 0
KV389500.1:subseq(688484,100443) exonerate:protein2genome:local similarity 50000 50443 728 + . alignment_id 1 ; Query SPP00000312_2.0 ; Align 50000 43 444
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis