Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000311_2.0.fa -t ./SPP00000311_2.0/fastasubseq/KV389478.1_fastasubseq.fa]
Hostname: [ws101072u]
C4 Alignment:
------------
Query: SPP00000311_2.0 # Protein # Iodothyronine deiodinase 3 (DIO3) # Marmoset
Target: KV389478.1:subseq(1783742,100854) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold52, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 1489
Query range: 0 -> 285
Target range: 50854 -> 49999
1 : GlyGluGlyGluGlySerArgGlyAlaSerGlyProAlaAlaThrMetLeuArgSerLeu : 20
||||||||||||||||||!:!|||||||||||||||||||||||||||||||||||||||
GlyGluGlyGluGlySerGlnGlyAlaSerGlyProAlaAlaThrMetLeuArgSerLeu
50854 : GGAGAGGGCGAGGGGTCCCAGGGGGCTTCGGGGCCTGCAGCCACCATGCTCCGCTCCCTG : 50797
21 : LeuLeuHisSerLeuArgLeuCysAlaGlnThrAlaSerCysLeuValLeuPheProArg : 40
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuLeuHisSerLeuArgLeuCysAlaGlnThrAlaSerCysLeuValLeuPheProArg
50796 : CTGCTTCACTCCTTGAGGCTCTGCGCCCAGACCGCCTCGTGCCTCGTGCTCTTCCCGCGC : 50737
41 : PheLeuGlyThrAlaPheMetLeuTrpLeuLeuAspPheLeuCysIleArgLysHisPhe : 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PheLeuGlyThrAlaPheMetLeuTrpLeuLeuAspPheLeuCysIleArgLysHisPhe
50736 : TTCCTCGGCACGGCCTTCATGCTCTGGCTCCTCGATTTCTTGTGTATCCGCAAGCATTTC : 50677
61 : LeuGlyArgArgArgArgGlyGlnProGluProAspValGluLeuAsnSerGluGlyGlu : 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuGlyArgArgArgArgGlyGlnProGluProAspValGluLeuAsnSerGluGlyGlu
50676 : CTGGGCCGCCGCCGCCGGGGGCAGCCCGAGCCCGATGTGGAGCTCAATAGTGAAGGCGAG : 50617
81 : GluValProProAspAspProProIleCysValSerAspAspAsnArgLeuCysThrLeu : 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GluValProProAspAspProProIleCysValSerAspAspAsnArgLeuCysThrLeu
50616 : GAGGTGCCCCCCGACGACCCGCCCATCTGCGTATCCGACGACAACCGCCTCTGCACCCTG : 50557
101 : AlaSerLeuLysAlaValTrpHisGlyGlnLysLeuAspPhePheLysGlnAlaHisGlu : 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AlaSerLeuLysAlaValTrpHisGlyGlnLysLeuAspPhePheLysGlnAlaHisGlu
50556 : GCGTCGCTCAAGGCAGTGTGGCATGGCCAGAAGTTGGATTTCTTCAAGCAGGCGCATGAG : 50497
121 : GlyGlyProAlaProAsnSerGluValValLeuProAspGlyPheGlnSerArgArgIle : 140
|||||||||||||||||||||||||||||||||||||||||||||||||||!:!!.!|||
GlyGlyProAlaProAsnSerGluValValLeuProAspGlyPheGlnSerGlnHisIle
50496 : GGCGGTCCGGCGCCCAACTCCGAGGTGGTTCTGCCCGACGGCTTCCAGAGCCAGCACATC : 50437
141 : LeuAspTyrAlaGlnGlyAsnArgProLeuValLeuAsnPheGlySerCysThrUnkPro : 160
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
LeuAspTyrAlaGlnGlyAsnArgProLeuValLeuAsnPheGlySerCysThr***Pro
50436 : CTCGACTACGCGCAAGGGAACCGCCCGCTGGTTCTCAATTTCGGCAGCTGCACCTGACCA : 50377
161 : ProPheMetAlaArgMetSerAlaPheGlnArgLeuValThrLysTyrGlnArgAspVal : 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ProPheMetAlaArgMetSerAlaPheGlnArgLeuValThrLysTyrGlnArgAspVal
50376 : CCGTTCATGGCGCGTATGAGCGCCTTCCAGCGCCTGGTCACCAAGTACCAGCGCGACGTC : 50317
181 : AspPheLeuIleIleTyrIleGluGluAlaHisProSerAspGlyTrpValThrThrAsp : 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AspPheLeuIleIleTyrIleGluGluAlaHisProSerAspGlyTrpValThrThrAsp
50316 : GACTTCCTCATCATCTACATCGAGGAAGCACACCCCTCCGATGGCTGGGTCACCACGGAC : 50257
201 : SerProTyrIleIleProGlnHisArgSerLeuGluAspArgValSerAlaAlaLysVal : 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SerProTyrIleIleProGlnHisArgSerLeuGluAspArgValSerAlaAlaLysVal
50256 : TCCCCCTACATCATCCCACAGCACCGGAGCCTGGAGGACCGGGTCAGCGCAGCGAAGGTA : 50197
221 : LeuGlnGlnGlyAlaProGlyCysAlaLeuValLeuAspThrMetAlaAsnSerSerSer : 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuGlnGlnGlyAlaProGlyCysAlaLeuValLeuAspThrMetAlaAsnSerSerSer
50196 : CTGCAGCAAGGTGCACCCGGCTGCGCTCTGGTCCTTGACACCATGGCCAACTCCAGCAGC : 50137
241 : SerAlaTyrGlyAlaTyrPheGluArgLeuTyrValIleGlnSerGlyThrIleMetTyr : 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SerAlaTyrGlyAlaTyrPheGluArgLeuTyrValIleGlnSerGlyThrIleMetTyr
50136 : TCGGCTTATGGCGCCTACTTCGAGCGTCTCTATGTCATCCAGAGTGGCACCATTATGTAC : 50077
261 : GlnGlyGlyArgGlyProAspGlyTyrGlnValSerGluLeuArgThrTrpLeuGluArg : 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlnGlyGlyArgGlyProAspGlyTyrGlnValSerGluLeuArgThrTrpLeuGluArg
50076 : CAGGGAGGCCGGGGCCCCGATGGCTACCAGGTCTCTGAGCTGCGCACTTGGTTGGAGCGC : 50017
281 : TyrAspGluGlnLeu : 285
|||||||||||||||
TyrAspGluGlnLeu
50016 : TATGATGAGCAGCTG : 50000
vulgar: SPP00000311_2.0 0 285 . KV389478.1:subseq(1783742,100854) 50854 49999 - 1489 M 285 855
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389478.1:subseq(1783742,100854) exonerate:protein2genome:local gene 50000 50854 1489 - . gene_id 1 ; sequence SPP00000311_2.0 ; gene_orientation .
KV389478.1:subseq(1783742,100854) exonerate:protein2genome:local cds 50000 50854 . - .
KV389478.1:subseq(1783742,100854) exonerate:protein2genome:local exon 50000 50854 . - . insertions 0 ; deletions 0
KV389478.1:subseq(1783742,100854) exonerate:protein2genome:local similarity 50000 50854 1489 - . alignment_id 1 ; Query SPP00000311_2.0 ; Align 50855 1 855
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis