Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000373_2.0.fa -t ./SPP00000373_2.0/fastasubseq/KV389477.1_fastasubseq.fa]
Hostname: [ws101092U]
C4 Alignment:
------------
Query: SPP00000373_2.0 # Protein # Selenoprotein W (SELENOW) # Marmoset
Target: KV389477.1:subseq(8621488,100176) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold51, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 322
Query range: 0 -> 75
Target range: 50176 -> 49951
1 : AlaUnkGlyCysLysSerLysTyrLeuGlnLeuLysLysLeuGluAlaGluPheProGly : 20
||| |||||||||||||||||||||||||||||||||||||||!.!||||||||||||
Ala***GlyCysLysSerLysTyrLeuGlnLeuLysLysLeuGluGlyGluPheProGly
50176 : GCTTGAGGCTGTAAGTCCAAGTATCTTCAGCTCAAGAAGTTAGAAGGTGAGTTCCCTGGC : 50119
21 : HisLeuAspIleGlyGlyGluArgThrProGlnAspThrGlyLeuPheGluValMetVal : 40
!|||||||||||||||||| !!.!!|||||||||||||||!!!|||||||||||||||
CysLeuAspIleGlyGlyGluGlyAlaProGlnAspThrGlyPhePheGluValMetVal
50118 : TGCCTGGACATTGGAGGTGAGGGAGCTCCCCAGGACACTGGGTTCTTTGAAGTAATGGTA : 50059
41 : AlaGlyLysLeuIleHisSerLysLysLysGlyAsnGlyTyrValAspThrGluSerLys : 60
||| !!|||||||||||||||||||||||||||:!!||||||:!!|||||||||||||||
AlaArgLysLeuIleHisSerLysLysLysGlyAspGlyTyrMetAspThrGluSerLys
50058 : GCCAGAAAGTTGATTCACTCTAAGAAGAAAGGTGATGGCTACATGGACACAGAAAGCAAG : 49999
61 : PheLeuLysLeuValAlaAlaIleLysAlaAlaLeuAlaGlnGly : 75
||||||||||||||||||||||||||||||!.!||||||||||||
PheLeuLysLeuValAlaAlaIleLysAlaValLeuAlaGlnGly
49998 : TTTCTGAAGCTGGTGGCCGCCATCAAAGCTGTCTTGGCTCAGGGC : 49952
vulgar: SPP00000373_2.0 0 75 . KV389477.1:subseq(8621488,100176) 50176 49951 - 322 M 75 225
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389477.1:subseq(8621488,100176) exonerate:protein2genome:local gene 49952 50176 322 - . gene_id 1 ; sequence SPP00000373_2.0 ; gene_orientation .
KV389477.1:subseq(8621488,100176) exonerate:protein2genome:local cds 49952 50176 . - .
KV389477.1:subseq(8621488,100176) exonerate:protein2genome:local exon 49952 50176 . - . insertions 0 ; deletions 0
KV389477.1:subseq(8621488,100176) exonerate:protein2genome:local similarity 49952 50176 322 - . alignment_id 1 ; Query SPP00000373_2.0 ; Align 50177 1 225
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis