Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000368_2.0.fa -t ./SPP00000368_2.0/fastasubseq/KV389451.1_fastasubseq.fa]
Hostname: [ws101092U]
C4 Alignment:
------------
Query: SPP00000368_2.0 # Protein # Selenoprotein T (SELENOT) # Marmoset
Target: KV389451.1:subseq(773759,100131) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold25, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 950
Query range: 0 -> 190
Target range: 36012 -> 54013
1 : LeuLeuLeuValAlaAlaSerAlaValValArgSerGluAlaSerAlaAsnLeuGlyGly : 20
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuLeuLeuValAlaAlaSerAlaValValArgSerGluAlaSerAlaAsnLeuGlyGly
36013 : CTTCTCCTGGTGGCGGCGTCGGCGGTGGTCCGGAGCGAGGCCTCGGCCAACCTGGGCGGC : 36070
21 : ValProSerLysArgLeuLysMetGlnTyrAlaThrGlyProLeuLeuLysPheGlnIle : 40
:!!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MetProSerLysArgLeuLysMetGlnTyrAlaThrGlyProLeuLeuLysPheGlnIle
36071 : ATGCCCAGCAAGAGATTAAAGATGCAGTACGCCACGGGGCCGCTGCTCAAGTTCCAGATT : 36130
41 : {Cy} >>>> Target Intron 1 >>>> {s}ValSerUnkGlyTyrArgArgVal : 49
{||} 13212 bp {|}|||||| |||||||||||||||
{Cy}++ ++{s}ValSer***GlyTyrArgArgVal
36131 : {TG}gt.........................ag{T}GTTTCCTGAGGGTATAGGCGGGTA : 49369
50 : PheGluGluTyrMetArgValIleSerGlnArgTyrProAspIleArgIleGluGlyGlu : 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PheGluGluTyrMetArgValIleSerGlnArgTyrProAspIleArgIleGluGlyGlu
49370 : TTTGAGGAGTACATGCGGGTTATTAGCCAGCGGTACCCAGACATCCGCATCGAAGGAGAG : 49429
70 : AsnTyrLeuProGlnProIleTyr{Ar} >>>> Target Intron 2 >>>> {g} : 78
||||||||||||||||||||||||{||} 544 bp {|}
AsnTyrLeuProGlnProIleTyr{Ar}++ ++{g}
49430 : AATTACCTCCCTCAACCAATATAT{AG}gt.........................ag{a} : 50002
79 : HisIleAlaSerPheLeuSerValPheLysLeuValLeuIleGlyLeuIleIleValGly : 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
HisIleAlaSerPheLeuSerValPheLysLeuValLeuIleGlyLeuIleIleValGly
50003 : CACATAGCATCTTTCCTGTCAGTCTTCAAACTAGTATTAATAGGCTTAATAATTGTTGGC : 50060
99 : LysAspProPheAlaPhePheGlyMetGlnAlaProSerIleTrpGlnTrpGlyGlnGlu : 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LysAspProPheAlaPhePheGlyMetGlnAlaProSerIleTrpGlnTrpGlyGlnGlu
50061 : AAGgatccttttgctttttttggcaTGCAAGCTCCTAGCATCTGGCAGTGGGGCCAAGAA : 50120
119 : AsnLys >>>> Target Intron 3 >>>> ValTyrAlaCysMetMetValPheP : 129
|||||| 1907 bp |||||||||||||||||||||||||
AsnLys++ ++ValTyrAlaCysMetMetValPheP
50121 : AATAAGgt.........................aggtcTATGCATGTATGATGGTTTTCT : 52060
130 : heLeuSerAsnMetIleGluAsnGlnCysMetSerThrGlyAlaPheGluIleThrLeuA : 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
heLeuSerAsnMetIleGluAsnGlnCysMetSerThrGlyAlaPheGluIleThrLeuA
52061 : TCTTGAGCAACATGATTGAGAACCAGTGTATGTCAACAGGTGCATTTGAGATAACTTTAA : 52120
150 : sn{A} >>>> Target Intron 4 >>>> {sp}ValProValTrpSerLysLeuG : 158
||{|} 1768 bp {||}||||||||||||||||||||||
sn{A}++ ++{sp}ValProValTrpSerLysLeuG
52121 : AT{G}gt.........................ag{AT}GTACCTGTATGGTCTAAGCTGG : 53915
159 : luSerGlyHisLeuProSerMetGlnGlnLeuValGlnIleLeuAspAsnGluMetLysL : 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
luSerGlyHisLeuProSerMetGlnGlnLeuValGlnIleLeuAspAsnGluMetLysL
53916 : AATCTGGTCACCTTCCATCCATGCAACAACTTGTTCAAATTCTTGACAATGAAATGAAGC : 53975
179 : euAsnValHisMetAspSerIleProHisHisArgSer : 190
||||||||||||||||||||||||||||||||||||||
euAsnValHisMetAspSerIleProHisHisArgSer
53976 : TCAATGTGCATATGGATTCAATCCCACACCATCGATCA : 54013
vulgar: SPP00000368_2.0 0 190 . KV389451.1:subseq(773759,100131) 36012 54013 + 950 M 40 120 S 0 2 5 0 2 I 0 13208 3 0 2 S 1 1 M 36 108 S 0 2 5 0 2 I 0 540 3 0 2 S 1 1 M 42 126 5 0 2 I 0 1903 3 0 2 M 29 87 S 0 1 5 0 2 I 0 1764 3 0 2 S 1 2 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local gene 36013 54013 950 + . gene_id 1 ; sequence SPP00000368_2.0 ; gene_orientation +
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local cds 36013 36134 . + .
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local exon 36013 36134 . + . insertions 0 ; deletions 0
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local splice5 36135 36136 . + . intron_id 1 ; splice_site "GT"
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local intron 36135 49346 . + . intron_id 1
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local splice3 49345 49346 . + . intron_id 0 ; splice_site "AG"
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local cds 49347 49457 . + .
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local exon 49347 49457 . + . insertions 0 ; deletions 0
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local splice5 49458 49459 . + . intron_id 2 ; splice_site "GT"
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local intron 49458 50001 . + . intron_id 2
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local splice3 50000 50001 . + . intron_id 1 ; splice_site "ag"
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local cds 50002 50128 . + .
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local exon 50002 50128 . + . insertions 0 ; deletions 0
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local splice5 50129 50130 . + . intron_id 3 ; splice_site "GT"
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local intron 50129 52035 . + . intron_id 3
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local splice3 52034 52035 . + . intron_id 2 ; splice_site "ag"
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local cds 52036 52123 . + .
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local exon 52036 52123 . + . insertions 0 ; deletions 0
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local splice5 52124 52125 . + . intron_id 4 ; splice_site "GT"
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local intron 52124 53891 . + . intron_id 4
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local splice3 53890 53891 . + . intron_id 3 ; splice_site "AG"
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local cds 53892 54013 . + .
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local exon 53892 54013 . + . insertions 0 ; deletions 0
KV389451.1:subseq(773759,100131) exonerate:protein2genome:local similarity 36013 54013 950 + . alignment_id 1 ; Query SPP00000368_2.0 ; Align 36013 1 120 ; Align 49348 42 108 ; Align 50003 79 126 ; Align 52036 121 87 ; Align 53894 151 120
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis