Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000367_2.0.fa -t ./SPP00000367_2.0/fastasubseq/KV389445.1_fastasubseq.fa]
Hostname: [ws101092U]
C4 Alignment:
------------
Query: SPP00000367_2.0 # Protein # Selenoprotein S (SELENOS) # Marmoset
Target: KV389445.1:subseq(10745661,100089) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold19, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 780
Query range: 0 -> 165
Target range: 53259 -> 48368
1 : ValGlySerLeuLeuAlaThrTyrGlyTrpHisIleValPheSerCysIleLeuLeuTyr : 20
||||||||||||||||||||||||||||||:!!|||||||||||||||||||||||||||
ValGlySerLeuLeuAlaThrTyrGlyTrpTyrIleValPheSerCysIleLeuLeuTyr
53259 : gtgggCTCCCTGCTGGCCACCTATGGCTGGTACATCGTCTTCAGCTGCATCCTTCTCTAC : 53202
21 : ValValPheGlnLysLeuSerThrArgLeuArgAlaLeuArgGlnArgGlnLeuAspArg : 40
|||! !||||||||||||||||||||||||||||||||||||||||||||||||||||||
ValGlyPheGlnLysLeuSerThrArgLeuArgAlaLeuArgGlnArgGlnLeuAspArg
53201 : GTGGGCTTCCAGAAGCTTTCCACCCGGCTAAGAGCCTTGAGGCAAAGGCAGCTGGACAGA : 53142
41 : AlaAlaAlaAlaVal{G} >>>> Target Intron 1 >>>> {lu}ProAspVal : 49
|||||||||||||||{|} 2171 bp {||}|||||||||
AlaAlaAlaAlaVal{G}++ ++{lu}ProAspVal
53141 : GCAGCGGCTGCTGTG{G}gt.........................ag{AA}CCTGATGTT : 50944
50 : ValValLysArgGlnGluAlaLeuAlaAlaAlaArgLeuLysMetGlnGluGluLeuAsn : 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ValValLysArgGlnGluAlaLeuAlaAlaAlaArgLeuLysMetGlnGluGluLeuAsn
50943 : GTTGTTAAACGACAAGAAGCTTTAGCAGCTGCTCGATTGAAAATGCAAGAAGAACTAAAT : 50884
70 : AlaGlnValGluLysHisLysGluLysLeuLysGln >>>> Target Intron 2 > : 82
|||||||||||||||||||||||||||||||||||| 571 bp
AlaGlnValGluLysHisLysGluLysLeuLysGln++
50883 : GCCCAAGTTGAAAAGCATAAAGAGAAACTAAAACAGgt...................... : 50843
83 : >>> LeuGluGluGluLysArgArgGlnLysIleGluMetTrpAspSerMetGlnGluG : 100
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
++LeuGluGluGluLysArgArgGlnLysIleGluMetTrpAspSerMetGlnGluG
50842 : ...agcttgaagaagaaaaaaggagacagaagaTTGAAATGTGGGACAGCATGCAAGAAG : 50220
101 : lyLysSerTyrLysGlyAsnAlaLysLysProGln >>>> Target Intron 3 >> : 112
||||||||||||||||||||||||||||||||||| 98 bp
lyLysSerTyrLysGlyAsnAlaLysLysProGln++
50219 : GAAAAAGTTACAAAGGAAATGCAAAGAAGCCTCAGgt....................... : 50182
113 : >> GluGluAspSerProGlyProSerThrSerSerValIleProLysArgLysSerAs : 130
||||||||||||||||||||||||||| !!||||||||||||||||||||||||||
++GluGluAspSerProGlyProSerThrProSerValIleProLysArgLysSerAs
50181 : ..agGAGGAAGACAGTCCTGGGCCTTCCACTCCATCTGTCATCCCGAAACGGAAATCGGA : 50032
131 : pArgLysProLeuArgGlyGly{G} >>>> Target Intron 4 >>>> {ly}Ty : 139
||||||||||||||||||||||{|} 1556 bp {||}||
pArgLysProLeuArgGlyGly{G}++ ++{ly}Ty
50031 : CAGAAAGCCTTTGCGGGGAGGT{G}gt.........................ag{GT}TA : 48449
140 : rAsnProLeuSerGlyGluGlyGlyGlyThrCysSerTrpArgProGlyArgArgGlyPr : 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rAsnProLeuSerGlyGluGlyGlyGlyThrCysSerTrpArgProGlyArgArgGlyPr
48448 : TAACCCTTTGTCTGGTGAAGGAGGTGGAACCTGCTCCTGGAGACCTGGACGCAGAGGCCC : 48389
160 : oSerSerGlyGlyUnkGly : 165
||||||||||||| |||
oSerSerGlyGly***Gly
48388 : GTCATCTGGCGGATGAGGC : 48369
vulgar: SPP00000367_2.0 0 165 . KV389445.1:subseq(10745661,100089) 53259 48368 - 780 M 45 135 S 0 1 5 0 2 I 0 2167 3 0 2 S 1 2 M 35 105 5 0 2 I 0 567 3 0 2 M 30 90 5 0 2 I 0 94 3 0 2 M 26 78 S 0 1 5 0 2 I 0 1552 3 0 2 S 1 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local gene 48369 53259 780 - . gene_id 1 ; sequence SPP00000367_2.0 ; gene_orientation +
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local cds 53124 53259 . - .
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local exon 53124 53259 . - . insertions 0 ; deletions 0
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local splice5 53122 53123 . - . intron_id 1 ; splice_site "GT"
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local intron 50953 53123 . - . intron_id 1
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local splice3 50953 50954 . - . intron_id 0 ; splice_site "AG"
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local cds 50846 50952 . - .
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local exon 50846 50952 . - . insertions 0 ; deletions 0
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local splice5 50844 50845 . - . intron_id 2 ; splice_site "GT"
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local intron 50275 50845 . - . intron_id 2
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local splice3 50275 50276 . - . intron_id 1 ; splice_site "ag"
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local cds 50185 50274 . - .
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local exon 50185 50274 . - . insertions 0 ; deletions 0
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local splice5 50183 50184 . - . intron_id 3 ; splice_site "GT"
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local intron 50087 50184 . - . intron_id 3
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local splice3 50087 50088 . - . intron_id 2 ; splice_site "AG"
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local cds 50008 50086 . - .
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local exon 50008 50086 . - . insertions 0 ; deletions 0
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local splice5 50006 50007 . - . intron_id 4 ; splice_site "GT"
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local intron 48452 50007 . - . intron_id 4
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local splice3 48452 48453 . - . intron_id 3 ; splice_site "AG"
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local cds 48369 48451 . - .
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local exon 48369 48451 . - . insertions 0 ; deletions 0
KV389445.1:subseq(10745661,100089) exonerate:protein2genome:local similarity 48369 53259 780 - . alignment_id 1 ; Query SPP00000367_2.0 ; Align 53260 1 135 ; Align 50951 47 105 ; Align 50275 82 90 ; Align 50087 112 78 ; Align 48450 139 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis