Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000326_2.0.fa -t ./SPP00000326_2.0/fastasubseq/KV389444.1_fastasubseq.fa]
Hostname: [ws101073u]
C4 Alignment:
------------
Query: SPP00000326_2.0 # Protein # Glutathione peroxidase (GPx) # Marmoset
Target: KV389444.1:subseq(8973590,100497) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold18, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 599
Query range: 0 -> 155
Target range: 50512 -> 49999
1 : ThrLeuProMetAlaGlyGlyGluProValSerLeuGlySerLeuTrpGlyLysAlaLeu : 20
.!!||||||||||||||||||||||||||| |||...|||||| !!||||||||||||
AlaLeuProMetAlaGlyGlyGluProValIleLeuSerSerLeuArgGlyLysAlaLeu
50512 : GCGCTCCCCATGGCCGGCggggagcctgtaatcctaagcTCCCTGCGGGGCAAGGCGCTG : 50455
21 : LeuIleLysAsnValAlaSerLeuUnkGlyThrThrValArgAspTyrThrGlnMetAsn : 40
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
LeuIleLysAsnValAlaSerLeu***GlyThrThrValArgAspTyrThrGlnMetAsn
50454 : CTTATCAAGAATGTGGCGTCCCTCTGAGGCACCACGGTCCGGGACTACACCCAGATGAAC : 50395
41 : LysLeuGlnTrpArgLeuGlyProSerAspLeuValValLeuGlyPheProCysAsnGln : 60
||||||||| !!||||||||||||||||||||||||||||||||||||||||||||||||
LysLeuGlnArgArgLeuGlyProSerAspLeuValValLeuGlyPheProCysAsnGln
50394 : AAGCTGCAGCGGCGCCTTGGGCCCAGTGACCTGGTGGTGCTCGGCTTCCCGTGCAACCAG : 50335
61 : PheGlyHisGlnGluAsnThrLysLysGluGluIleLeuAsnSerLeuLysTyrValGln : 80
||||||||||||||||||.!!|||!!.||||||||||||||||||||||||||||||!:!
PheGlyHisGlnGluAsnAlaLysAsnGluGluIleLeuAsnSerLeuLysTyrValArg
50334 : TTTGGGCATCAGGAGAACGCCAAGAACGAAGAGATTCTGAATTCCCTAAAGTACGTCCGA : 50275
81 : ProArgGlyGlyPheGlnProAsnPheSerPhePheGluLysCysGluValAsnGlyVal : 100
||| !!|||! !||||||||||||||||||.!!|||! !|||! !:!!|||||||||!.!
ProGlyGlyGluPheGlnProAsnPheSerLeuPheGlyLysPheGlnValAsnGlyAla
50274 : CCTGGTGGTGAGTTCCAGCCCAACTTCTCGCTCTTTGGGAAGTTCCAGGTCAATGGTGCA : 50215
101 : ArgSerHisProLeuLeuAlaPheLeu >>>> Target Intron 1 >>>> ThrA : 111
!:!! !|||||||||!!!.!!|||||| 48 bp |||
LysLeuHisProLeuPheThrPheLeu-- -+ThrT
50214 : AAGTTGCACCCTCTCTTCACCTTCCTGcg.........................cgACCT : 50134
112 : rgSerSerValSerLeuMetCysGlyAsnAspValAlaTrpAsnPheLysLysPheLeuA : 131
!!||| !!|||||||||:!!||| !!|||:!!||||||||||||||||||||||||||||
rpSerProValSerLeuValCysCysAsnAsnValAlaTrpAsnPheLysLysPheLeuA
50133 : GGTCTCCAGTGTCTCTGGTGTGTTGCAACAATGTTGCCTGGAACTTCAAGAAGTTCCTGG : 50074
132 : spGlyProAlaGlyAlaProValHisArgTyrSerArgAlaSerArgProLeuThrLeuA : 151
||||||||.!!|||||||||:!!:!!||||||||| !!||||||||||||||||||||||
spGlyProThrGlyAlaProIleTyrArgTyrSerCysAlaSerArgProLeuThrLeuA
50073 : ATGGCCCTACCGGTGCCCCCATATACAGGTACAGCTGCGCTTCCAGACCATTGACATTGA : 50014
152 : rgLeuThrSerLys : 155
||||||||||||||
rgLeuThrSerLys
50013 : GGCTGACATCCAAG : 50000
vulgar: SPP00000326_2.0 0 155 . KV389444.1:subseq(8973590,100497) 50512 49999 - 599 M 109 327 5 0 2 I 0 44 3 0 2 M 46 138
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389444.1:subseq(8973590,100497) exonerate:protein2genome:local gene 50000 50512 599 - . gene_id 1 ; sequence SPP00000326_2.0 ; gene_orientation +
KV389444.1:subseq(8973590,100497) exonerate:protein2genome:local cds 50186 50512 . - .
KV389444.1:subseq(8973590,100497) exonerate:protein2genome:local exon 50186 50512 . - . insertions 0 ; deletions 0
KV389444.1:subseq(8973590,100497) exonerate:protein2genome:local splice5 50184 50185 . - . intron_id 1 ; splice_site "CG"
KV389444.1:subseq(8973590,100497) exonerate:protein2genome:local intron 50138 50185 . - . intron_id 1
KV389444.1:subseq(8973590,100497) exonerate:protein2genome:local splice3 50138 50139 . - . intron_id 0 ; splice_site "CG"
KV389444.1:subseq(8973590,100497) exonerate:protein2genome:local cds 50000 50137 . - .
KV389444.1:subseq(8973590,100497) exonerate:protein2genome:local exon 50000 50137 . - . insertions 0 ; deletions 0
KV389444.1:subseq(8973590,100497) exonerate:protein2genome:local similarity 50000 50512 599 - . alignment_id 1 ; Query SPP00000326_2.0 ; Align 50513 1 327 ; Align 50138 110 138
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis